CN185888

Overview
NameCN185888
Unique NameCN185888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  246 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE-GDKSQDEIDFEFLG---KDKTIVQTNYYTTGT--GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFPNKPMFLYASVWDAS 680
            D  S+ LT D R G+ + S   +L+G FS+ I+ P   T+G+    Y+S+ +  +K+ DEIDFEFLG   + +  VQTN Y  G+    REE ++L FD +E FH+Y I W    I + +D   +R  +R    G  FP+KPM LY ++WD S
Sbjct:   49 DGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGS 201          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.326e-21
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 3
Query:  246 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLE-GDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGN--REEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FPNKPMFLYASVWDAS 680
            D  S+ LT D R G+ + S   +L+G FSS I+ P   ++G+    YLS+ +  +K+ DEIDFEFLG     +  +QTN Y  G+ +  REE ++L FD +E FH+Y I W    I + +D   +R  +R    G  FP KPM LY+++WD S
Sbjct:   49 DGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGS 201          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.650e-21
Identity = 55/146 (37.67%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  288 ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCD 725
            A +RST  + YG +   ++  K      +F  Y     G +  DEID EFLGKD T VQ NYYT G G  E++  LGFD S+GFH Y   W P  I+W +DG +   A  N     P+ P  +  ++W+ + +D   W G Y G +
Sbjct:   85 AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTPGKIMMNLWNGTGVDD--WLGSYNGAN 223          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 60/167 (35.93%), Postives = 85/167 (50.90%), Query Frame = 3
Query:  237 HCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARW 701
            H  D   ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT GTG++E+   L FD +  FH Y I W P  I + +DG  +R  +  E  G P    +PM LYAS+W+A H      ++K  W
Sbjct:   45 HDRDGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDW 209          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 69/208 (33.17%), Postives = 103/208 (49.52%), Query Frame = 3
Query:  132 VVTLELEMADPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFP-NKPMFLYASVWDASH------IDKARWC-GPYV 716
            V+++ L +   ++  +H  +  ++I I +         +   + L  D   G+ ++S   +LYG     I+   GN++G     YL S     + DEIDFEFLG    D  IV TN YT G G+RE+   L FD +  FH Y I W P  I + IDGK +R  +  E  G  +P N+PM +Y S+W+A        + K  W  GP+V
Sbjct:    8 VMSISLFLGLSILLVVHGKDFNQDIDITWGDGRGNILNNGTLLNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQ--GLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWSQGPFV 213          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 54/144 (37.50%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  294 WRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCD 725
            +RST  + YG +   ++  K      +F  Y     G +  DEID EFLGKD T VQ NYYT G G  E+I +LGFD S  FH Y   W P  I+W +DG +   A  N     P+ P  +  ++W+ + +D   W G Y G +
Sbjct:   88 YRSTNNYGYGLYEVSMKPAKNTGIVSSFFTYTGPSHGTQ-WDEIDIEFLGKDTTKVQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDGVLKHTATTN----IPSTPGKIMMNLWNGTGVDS--WLGSYNGAN 224          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 59/155 (38.06%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  246 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKS-QDEIDFEFLG----KDKTIVQTNYYTTGTGN-----REEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDAS 680
            D N++T+  D   G+ ++S   F  G F + I+   G T+G+  ++YLS+ E      DE+D EFLG    K  T+ QTN Y  G+G+     RE    L FD ++ FH Y I W P  I +L+D   +RR  +     FP +PM+LY S+WDAS
Sbjct:   59 DQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTL-QTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPLRPMWLYGSIWDAS 212          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  246 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARW 701
            D   ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT G+G++E+   L FD +  FH Y I W P  I + +DG  +R  + +E  G P    +PM LYAS+W+A H      ++K  W
Sbjct:   48 DGKLLSLSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDW 209          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 59/162 (36.42%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  252 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDASH------IDKARW 701
            N ++L+ D   G+ ++S   FLYG     ++   GN++G     YL S     + DEIDFEFLG        + TN YT GTG++E+   L FD +  FH Y I W P  + + IDG  +R  + +E  G P   ++PM LYAS+W+A H      ++K  W
Sbjct:   50 NLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKS--PGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDW 209          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: GUB_BACSU (Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19
Identity = 52/141 (36.88%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  297 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVG 719
            RS   + YG +   ++  K      +F  Y    +G    DEID EFLGKD T VQ NYYT G GN E+I DLGFD +  +H Y   W P+ I+W +DG++   A        P  P  +  ++W+ + +D+  W G Y G
Sbjct:   93 RSVQTYGYGLYEVRMKPAKNTGIVSSFFTYTGPTDGTP-WDEIDIEFLGKDTTKVQFNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATNQ----IPTTPGKIMMNLWNGTGVDE--WLGSYNG 226          
The following BLAST results are available for this feature:
BLAST of CN185888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
XTH27_ARATH6.675e-2239.87Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH4.326e-2139.87Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_PAEMA5.650e-2137.67Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
XTH17_ARATH1.259e-2035.93Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH2.804e-2033.17Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_PAEPO3.662e-2037.50Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
XTH32_ARATH4.783e-2038.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH4.783e-2035.37Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH6.247e-2036.42Xyloglucan endotransglucosylase/hydrolase protein ... [more]
GUB_BACSU1.066e-1936.88Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185888 ID=CN185888; Name=CN185888; organism=Citrus sinensis; type=EST; length=732bp
GAGGGGCAAGGCCCGTGAATCGTTTTTAGAAATGCTTAGGAGCAGTGGGC
TCACTGTAAAAAGTCTGGTTTCTCCTTCAGTTGACTTCACTTTCTTTCTT
CCGTAAATTGAAATCGGTAAGCAGCAATTCTGTCGTGACCCTTGAACTTG
AAATGGCGGATCCAGTTGTCCAGAGTCTCCATCAAACTGAACCCATAAAA
GAAATCGCCATAGATTACACCCCGGAAGCATGCACTCACTGCGCAGACTC
CAATTCGATCACACTCACCTTCGATCACCGCGGCGGAGCCAGGTGGCGCT
CCACCACTCGCTTCCTCTACGGCACCTTCAGCTCCCTGATCCAGTGCCCC
AAAGGCAACACTAGTGGCCTCAACTTCAACATCTACCTTTCTTCTCTAGA
AGGCGACAAATCCCAAGACGAAATCGACTTTGAATTCCTTGGCAAGGACA
AGACTATCGTTCAAACCAATTATTACACTACAGGAACCGGGAATAGAGAG
GAGATTCATGATCTGGGGTTCGATTGTTCTGAAGGATTTCATGAGTACGT
GATCAAGTGGGGTCCAGATTTGATCCAGTGGTTGATTGATGGGAAGGTGG
TGAGGAGAGCTGAGAGGAACGAGGGTGAGGGGTTTCCCAATAAACCAATG
TTTTTGTATGCTTCAGTTTGGGATGCTAGCCACATTGATAAGGCCAGGTG
GTGTGGGCCCTACGTGGGCTGTGATGCACCTT
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