CN185875

Overview
NameCN185875
Unique NameCN185875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2509 contig Csv1_Contig2509:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185875 vs. ExPASy Swiss-Prot
Match: RNF38_HUMAN (RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 1.194e-13
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  206 DPDELSYEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 490
            D +  +YE LL L E +G ++ RGL+   +  LP+  +     Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  414 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQS-EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 508          
BLAST of CN185875 vs. ExPASy Swiss-Prot
Match: RNF44_HUMAN (RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  206 EVDPDEL-SYEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 496
            +VD  E+ +YE LL L E +G ++ RGL+   +  LP+  +   + Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  328 DVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS-EQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADAS 425          
BLAST of CN185875 vs. ExPASy Swiss-Prot
Match: RNF38_MOUSE (RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  206 DPDELSYEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 490
            D +  +YE LL L E +G ++ RGL+   +  LP+  +     Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  417 DGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPSNHQS-EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADAS 511          
BLAST of CN185875 vs. ExPASy Swiss-Prot
Match: RNF44_RAT (RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  206 EVDPDEL-SYEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 496
            +VD  E+ +YE LL L E +G ++ RGL+   +  LP+  +   + Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  246 DVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS-EQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 343          
BLAST of CN185875 vs. ExPASy Swiss-Prot
Match: RNF44_MOUSE (RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  206 EVDPDEL-SYEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 496
            +VD  E+ +YE LL L E +G ++ RGL+   +  LP+  +   + Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  303 DVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS-EQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 400          
BLAST of CN185875 vs. ExPASy Swiss-Prot
Match: RNF44_DANRE (RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = -3
Query:  206 EVDPDEL-SYEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 496
            +VD  E+ +YE LL L E +G ++ RGL+   +  LP+  +     Q+     CV+C  D+E  + L VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct:  344 DVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQS-EQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADAS 441          
BLAST of CN185875 vs. ExPASy Swiss-Prot
Match: RF12B_XENLA (E3 ubiquitin-protein ligase rnf12-B OS=Xenopus laevis GN=rnf12-B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 47/163 (28.83%), Postives = 67/163 (41.10%), Query Frame = -3
Query:  197 EEDNNPSVEYDSDVFSSDEAYARALQDAEERDMAARLLALAEIHDREIEDPEDHGGHSQDTWEEVDPDELSYEELLALGEVVGSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 685
            E  NNPS E  + +    E  A       E D  + +   A       E     GG + +  E      LS  +   L E    + RGL+ + +  L T NY     +N +  +C +C  +Y +G  L  L C H YH  CI+ WL  N  CP+C   V  +G
Sbjct:  604 EVQNNPSAEVRAPIAEPAEPVAPV-----ESDEGSNVATSATRR----EGRNSRGGVTLE--ESGSLPFLSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNY----GENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAG 751          
The following BLAST results are available for this feature:
BLAST of CN185875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RNF38_HUMAN1.194e-1336.46RING finger protein 38 OS=Homo sapiens GN=RNF38 PE... [more]
RNF44_HUMAN2.660e-1337.37RING finger protein 44 OS=Homo sapiens GN=RNF44 PE... [more]
RNF38_MOUSE2.660e-1336.46RING finger protein 38 OS=Mus musculus GN=Rnf38 PE... [more]
RNF44_RAT3.475e-1337.37RING finger protein 44 OS=Rattus norvegicus GN=Rnf... [more]
RNF44_MOUSE3.475e-1337.37RING finger protein 44 OS=Mus musculus GN=Rnf44 PE... [more]
RNF44_DANRE4.538e-1337.37RING finger protein 44 OS=Danio rerio GN=rnf44 PE=... [more]
RF12B_XENLA5.547e-1128.83E3 ubiquitin-protein ligase rnf12-B OS=Xenopus lae... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002A02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185875 ID=CN185875; Name=CN185875; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTAATTCCAAGGTGGGCATGAAATATTTCATTTAACCATTTGG
ATACAAGCAGGTGTCTTTTTTTTCTTAGTCTACCCATGATTAAAGAAGCA
CCGCAATTATATCATTCAGTATCAGTATAAGCAGTGCAGGACTTTTTTCT
TTCTTTGTCTAACAGAGAAGGAGACTTCATCGATATGCTAACTGGGGCCA
GAAGTGGAGACCTCGGCACTGCAAACAGGACAGACCTTGTTTATTTTCAA
CCAATTGTTTATGCACTCAGAATGGTACGAGTGTTTGCAAGAAAGCACAG
TCAAGGTCTCACCATCCTCATAGTCCAAACGACAAATAACACAGGAATCA
TTGCTTCCATTTTGACTGGTTCCTCCCTTGTAATTTACCGTAGGCAAAGT
GGCAAGTGTATCAGCTGATAGACCTCTACTCTCACTTCCAACCACTTCAC
CCAATGCAAGCAATTCCTCATATGAGAGCTCATCCGGATCAACCTCCTCC
CATGTATCCTGAGAGTGACCGCCATGATCCTCTGGGTCCTCAATTTCTCG
GTCATGGATTTCAGCAAGAGCCAACAACCTAGCAGCCATGTCTCTTTCTT
CAGCGTCCTGTAGAGCTCTTGCATAAGCCTCATCACTTGAAAACACATCC
GAGTCATATTCAACACTAGGATTGTTGTCTTCTTCAACTTCTTCATGGAG
CATGCACATCAAATGCATCCTCATCTTCATCATCATCGTCAATAACAAAA
back to top