CN185865

Overview
NameCN185865
Unique NameCN185865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:1330..1843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185865 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.889e-22
Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 3
Query:    6 LRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHV-IPMVNETQGD--KPLKKSVRETQEEVTRHWKRFVKGRRAGAC 317
            LR+FGWIVPAYTMP +AE++AVLRVV+REDFS SL ERL+S IE++L E+++ P R+ TK   V    V + +GD          ETQ+++ +HW++    + +G C
Sbjct:  396 LRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502          
BLAST of CN185865 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.179e-22
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    6 LRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRR 305
            LR+FGWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+VL E+++LP+RV+ K A V        G +  KK+  E Q E+   WK+FV+ ++
Sbjct:  395 LRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLA-VAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK 493          
BLAST of CN185865 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.037e-20
Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 3
Query:    6 LRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRRA--GAC 317
            LR+FGWIVPAYTMPA+A+++ VLRVV+REDFSR+L ERL++ I +VL E+++LPS++S K    I  + E   +K ++K   E   EV   W++FVK R+   G C
Sbjct:  394 LRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKISKKMG--IEGIAENVKEKKMEK---EILMEVIVGWRKFVKERKKMNGVC 494          
BLAST of CN185865 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.768e-20
Identity = 52/109 (47.71%), Postives = 76/109 (69.72%), Query Frame = 3
Query:    6 LRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDK---PLKKSVRETQEEVTRHWKRFVKGRR--AGAC 317
            LR++GWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+V++E++ LPSRV  K + +    +E+  D     +KKS  + Q ++   WK+FV  R+  +G C
Sbjct:  395 LRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKIS-LGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRKKTSGIC 502          
The following BLAST results are available for this feature:
BLAST of CN185865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DCE_SOLLC1.889e-2247.66Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_PETHY7.179e-2252.00Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE2_ARATH1.037e-2050.00Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE1_ARATH1.768e-2047.71Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185865 ID=CN185865; Name=CN185865; organism=Citrus sinensis; type=EST; length=514bp
ATGGTTTGAGAAAGTTTGGGTGGATAGTTCCGGCCTATACAATGCCTGCT
AATGCTGAAAATGTGGCGGTTCTTCGGGTGGTTGTCAGGGAGGATTTCAG
CCGTAGCTTGGTGGAAAGACTCATCTCACACATCGAGGAAGTTTTGAAGG
AAATTGAATCGCTTCCAAGTCGTGTATCCACAAAAACTGCCCATGTCATA
CCCATGGTCAACGAAACTCAGGGTGATAAGCCACTTAAGAAGAGTGTGAG
GGAGACTCAGGAGGAAGTCACCAGGCACTGGAAGAGGTTCGTGAAAGGCC
GGAGAGCTGGAGCATGCTGAGGTTCCAAACATAAGATGAGACAAGATTTG
TATGCTTGTTTGAATATTAAAGCTATTGCTTCTTCCTGTTTTCTGTATAT
TCGTACTTGAAGGTGTGTTTACTTTATGTGATTGTTGAAGCCTATTTATG
TTTTCTTGCACGCTTGTGAAGTGGCAAATAGAGGTATATGCTTATTGCTT
ANAAAAAAAAAAAA
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