CN185852

Overview
NameCN185852
Unique NameCN185852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2660 contig Csv1_Contig2660:153..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.946e-35
Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = -2
Query:  231 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 476
            MQNEEGQ  +LYIPRKCSATNRLITSKDHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +Q+
Sbjct:    1 MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQK 82          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.254e-34
Identity = 64/82 (78.05%), Postives = 76/82 (92.68%), Query Frame = -2
Query:  231 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 476
            M+N+ GQ  +LYIPRKCSATNR+ITSKDHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +QQ
Sbjct:    1 MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.111e-33
Identity = 63/82 (76.83%), Postives = 76/82 (92.68%), Query Frame = -2
Query:  231 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 476
            MQNEEGQ +DLY+PRKCSATNR+IT+KDHA+VQINIGHVD +G+Y G+F+TFAL GF+RAQGD DSA+DRLWQK+K EV+QQ
Sbjct:    1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVKQQ 82          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.048e-32
Identity = 61/81 (75.31%), Postives = 75/81 (92.59%), Query Frame = -2
Query:  234 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQ 476
            MQNEEG+ +DLY+PRKCSATNR+IT+KDHA+VQINIGH+DA+G+Y G F+TFAL GFVRAQGD DS++DRLWQKKK E++Q
Sbjct:    1 MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKAEIKQ 81          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_CYAPA (40S ribosomal protein S21 OS=Cyanophora paradoxa GN=RPS21 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            MQN+EG+ +DLYIPRKCSATNRLI++ DHAAVQIN+GHVD + G+YTG ++TFALCGFVR+ G+ D+A++RL  K
Sbjct:    1 MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVRSMGESDAALNRLCVK 75          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_DICDI (40S ribosomal protein S21 OS=Dictyostelium discoideum GN=rps21 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = -2
Query:  252 EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKK 464
            + +N++LY PRKCSATNRLIT+KDHA+VQINIGHV+A+GIY G+ + FA CGF+R  G  D+A++RL Q+K
Sbjct:    2 DSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNGQSDAALNRLAQQK 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_ASPFU (40S ribosomal protein S21 OS=Aspergillus fumigatus GN=rps21 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 42/74 (56.76%), Postives = 62/74 (83.78%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            M+NE+G+ +DLY+PRKCSATNR+I + DHA+VQI+I  VD +G YTG+  ++ALCGF+RA+G+ D +++RL Q+
Sbjct:    1 MENEKGEIVDLYVPRKCSATNRIIKANDHASVQISIAKVDENGRYTGENQSYALCGFIRARGESDDSLNRLCQR 74          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_BRABE (40S ribosomal protein S21 OS=Branchiostoma belcheri GN=RPS21 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = -2
Query:  246 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKV 476
            MQN+ G+ +DLYIPRKCS+TNR+I +KDHA++QIN   VD   G  TGQ+ T+A+CG++R  G+ D  + RL  K K+
Sbjct:    1 MQNDAGEVVDLYIPRKCSSTNRIIGAKDHASIQINFAEVDPTTGRMTGQYKTYAICGYIRQMGESDDCLKRLAIKDKI 78          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_ASHGO (40S ribosomal protein S21 OS=Ashbya gossypii GN=RPS21 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 41/75 (54.67%), Postives = 60/75 (80.00%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            M+N++GQ ++LY+PRKCSATNR+I +KDH +VQINI  VD +G    G++ T+AL G+VRA+G+ D +++RL QK
Sbjct:    1 MENDKGQLVELYVPRKCSATNRIIKAKDHGSVQINIAQVDENGHAVPGEYITYALSGYVRARGEADDSMNRLAQK 75          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_KLULA (40S ribosomal protein S21 OS=Kluyveromyces lactis GN=RPS21 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 39/75 (52.00%), Postives = 61/75 (81.33%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            M+N++GQ ++LY+PRKCSATNR+I +KDH++VQINI  VD +G    G++ T+AL G++RA+G+ D +++RL Q+
Sbjct:    1 MENDKGQLVELYVPRKCSATNRIIKAKDHSSVQINIAQVDEEGRAIPGEYVTYALSGYIRARGEADDSLNRLAQQ 75          
The following BLAST results are available for this feature:
BLAST of CN185852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS212_ARATH2.946e-3581.7140S ribosomal protein S21-2 OS=Arabidopsis thalian... [more]
RS211_ARATH4.254e-3478.0540S ribosomal protein S21-1 OS=Arabidopsis thalian... [more]
RS21_ORYSJ2.111e-3376.8340S ribosomal protein S21 OS=Oryza sativa subsp. j... [more]
RS21_MAIZE1.048e-3275.3140S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=... [more]
RS21_CYAPA3.991e-2468.0040S ribosomal protein S21 OS=Cyanophora paradoxa G... [more]
RS21_DICDI2.421e-2163.3840S ribosomal protein S21 OS=Dictyostelium discoid... [more]
RS21_ASPFU1.569e-2056.7640S ribosomal protein S21 OS=Aspergillus fumigatus... [more]
RS21_BRABE3.272e-1852.5640S ribosomal protein S21 OS=Branchiostoma belcher... [more]
RS21_ASHGO9.521e-1854.6740S ribosomal protein S21 OS=Ashbya gossypii GN=RP... [more]
RS21_KLULA1.624e-1752.0040S ribosomal protein S21 OS=Kluyveromyces lactis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185852 ID=CN185852|Name=CN185852|organism=Citrus sinensis|type=EST|length=546bp
GGCGGGGGAGCGCGTCGCCGTTTTTTTTAGCTGTAAGCAAATCATGACCA
TATATTAAGTTCGACAGATAAACAAACTAAGTGCTAATCATGGTCCAAAA
GCAGAAGTAAATTTCAACATGGTCCACATAAGTAAAACTAGAACAAACGA
ATCGTTGCAATCACATTCCAACCCTTACAGAAGAAGACAACTGCTAGAGA
AGACACATAACTTGCTTTAATGGAAAATTATTGTTGTCGGACCTCAACTT
TCTTCTTTTGCCAAAGCCTGTCAATGGCGCTGTCACCGTCACCCTGAGCA
CGGACGAAGCCGCAGAGAGCGAAAGTGGAGAATTGGCCAGTGTAAATGCC
ATCAGCATCAACGTGCCCGATGTTGATCTGGACAGCGGCGTGATCCTTGG
AGGTGATGAGCCTGTTTGTGGCGGAACACTTCCTGGGGATATAGAGATCC
ATGTTTTGACCCTCCTCGTTCTGCATCTTGGCTGAGTTTTTTTCTTTCTT
CTTTTTTTTCCTTCTTCTTCCTTTTGACGGCCGGAAATACTAGCCT
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