CN185848

Overview
NameCN185848
Unique NameCN185848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5958 contig Csv1_Contig5958:98..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185848 vs. ExPASy Swiss-Prot
Match: TXD17_DANRE (Thioredoxin domain-containing protein 17 OS=Danio rerio GN=txndc17 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = -1 
Query:  269 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 508
            K K  F  F  DKD     SWCPDCV+AEPV+   L   P+    +   VGDRP W++  + F+     KLTGVPTL R+
Sbjct:   23 KGKEIFAYFSGDKDEHGK-SWCPDCVKAEPVVRAELPHLPEGTVFIYCQVGDRPYWKDSNNDFK--KTLKLTGVPTLLRY 99
[Close]
BLAST of CN185848 vs. ExPASy Swiss-Prot
Match: TXD17_MOUSE (Thioredoxin domain-containing protein 17 OS=Mus musculus GN=Txndc17 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = -1 
Query:  269 FDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 535
            FDK   E  + K  F  F   KD +   SWCPDCV AEPVI + L+   +D   +   VGD+P W++P + FR   + K+T VPTL ++
Sbjct:   15 FDKAVKEH-EGKTIFAYFSGSKD-TEGKSWCPDCVEAEPVIREGLKHVTEDCVFIYCQVGDKPYWKDPNNDFR--QKLKITAVPTLLKY 99
The following BLAST results are available for this feature:
BLAST of CN185848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TXD17_DANRE5.906e-1245.00Thioredoxin domain-containing protein 17 OS=Danio ... [more]
TXD17_MOUSE1.007e-1141.57Thioredoxin domain-containing protein 17 OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185848 ID=CN185848; Name=CN185848; organism=Citrus sinensis; type=EST; length=610bp
TTTTTTTTTTTTTTTTTGTAAAATGCAATGTCATCAGTAGACACTTCCCT
TTATTGGCCCCCGAAGGGCAACGTCGCTAGCCAGCACCCTTAACATGCAT
ATAAAACCAGCAAAAATGCCAAGATAGATTGAAACCAACCATATAGGATT
CTTGTGCATCCTACAAATGGGAAACCATCAGAACTTAATCGGCAGAAAGA
AGGGGTTTGATTTTGTGCTCGAGATGGGCTTCATGGTCTTCAAGACGGCC
GCTGACTATGTCATTTTCCCAGCGGAAGAGTGTCGGAACTCCCGTCAGTT
TGAACCTTGAATTAACCCTGAATGGGTGCTGAGGATTCCTCCATGTTGGT
CTATCCCCAACATAAGCCTGCAGCAGTGCGATGTCATCTGGTGAAGCTTC
CAGGGTTTTGTAGATTACAGGTTCAGCTCTCACGCAATCAGGGCACCAGC
TGAGAGAAGTAGAGGGATCTTTGTCCGCGAGAAAAAGAATGAAATTGGCT
TTATTTTTGGGCGCCTCCGATTTAAACTTGTCAAAGACATTGTCCAAGCT
TGAGACTGTTGCCTCCGACAAGTTGAGCGGCATTTGGATTTGGCTGGCCT
GGCCTCCCCT
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