CN185845

Overview
NameCN185845
Unique NameCN185845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:94..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 7.186e-63
Identity = 96/170 (56.47%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  190 KTGGQISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTP 699
            K G +++AKFELKPPPYPLN LEP MS+ TLEFHWGKHH+ YV+NL KQ+VGTEL DGKSLE++++ SYNKGD+LPAFNNAAQ WNHDFFW                 LIERDFGS             TQFGSGWAWL Y+            P P E D  L+V+K+P
Sbjct:   18 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTEL-DGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSP 185          

HSP 2 Score: 62.3882 bits (150), Expect = 7.186e-63
Identity = 29/33 (87.88%), Postives = 29/33 (87.88%), Query Frame = 2
Query:  698 PNAVNPLVWD-YSSLLTIDVWEHAYYLDFQNRR 793
            PNAVNPLVW  Y  LLTIDVWEHAYYLDFQNRR
Sbjct:  185 PNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRR 217          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.218e-45
Identity = 93/171 (54.39%), Postives = 104/171 (60.82%), Query Frame = 1
Query:  214 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPQCCQSSCLG 726
            KFEL+PPPYP++ALEPHMS  T EFHWGKHHRAYVDNLNKQI GTEL DGK+LED+++ +YNKG  LPAFNNAAQAWNH FFW                 LI RDFGS             TQFGSGWAWL YK                 ++K L +VKTP       LG
Sbjct:    1 KFELQPPPYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTEL-DGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYK----------------PEEKKLALVKTPNAENPLVLG 154          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 1.758e-42
Identity = 87/174 (50.00%), Postives = 104/174 (59.77%), Query Frame = 1
Query:  205 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPQCCQSSCLG 726
            ++A + LKPPP+ L+ALEPHMSK TLEFHWGKHHRAYVDNL KQ++GTEL +GK LE ++ ++YN GDLLPAFNNAAQAWNH+FFW                 L+ERDF S             TQFG+GWAWL Y                   ++ L VVKTP       LG
Sbjct:    7 VTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAY------------------SNEKLKVVKTPNAVNPLVLG 161          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 5.054e-35
Identity = 61/132 (46.21%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F  +P PY  NALE + M  +T E+H+GKHH+AYVDNLNK   GTEL D KSLE+V+  ++        FNNAAQ WNH FFW                  I +DFGS             TQFGSGWAWL+
Sbjct:    3 FVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELAD-KSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLI 133          

HSP 2 Score: 51.2174 bits (121), Expect = 5.054e-35
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PNA NPL     +LLT+DVWEHAYY+DF+N R
Sbjct:  145 PNAENPLAHGQKALLTLDVWEHAYYIDFRNAR 176          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.253e-34
Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F   P P+P +ALEP+ M  +T ++H+GKHH AYV NLNK + GT + +  SLEDV+  S+     +  FNNAAQ WNH FFW                  I+  FGS             TQFGSGWAWLV
Sbjct:    3 FTQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVEGTPM-ESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKAGGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWLV 133          

HSP 2 Score: 54.299 bits (129), Expect = 9.253e-34
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PNA NPLV     LLT+DVWEHAYYLDFQN R
Sbjct:  145 PNAENPLVHGQKPLLTLDVWEHAYYLDFQNAR 176          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 4.517e-33
Identity = 58/125 (46.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query:  235 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            PY   ALEP +SK TLEFH  KHH AYV+N N  + GT+L D +S+EDV+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV
Sbjct:    9 PYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDL-DNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLV 132          

HSP 2 Score: 50.0618 bits (118), Expect = 4.517e-33
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA NP+    + LLT+DVWEHAYYLD+QNRR
Sbjct:  145 NAENPMTAGQTPLLTMDVWEHAYYLDYQNRR 175          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.096e-31
Identity = 58/131 (44.27%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F L   PY L+AL PH+SK+TLE+H+GKHH  YV NLNK I GTE  +  +LE++++ +  KG +   FNNAAQ WNH F+W                  I + FGS             T FGSGWAWLV
Sbjct:    3 FTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEF-ESMTLEEIIMKA--KGGI---FNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLV 127          

HSP 2 Score: 45.0542 bits (105), Expect = 3.096e-31
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+    ++LLT DVWEHAYY+D++NRR
Sbjct:  141 NAGTPMTEGLNALLTCDVWEHAYYIDYRNRR 171          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.891e-31
Identity = 55/131 (41.98%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            +EL   P+   AL P+++K+TLEFH  KHH AYV+N N  +  T+L DG+ +E V+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV
Sbjct:    3 YELPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVKDTDL-DGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKPNGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLV 132          

HSP 2 Score: 48.9062 bits (115), Expect = 8.891e-31
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+    + LLTIDVWEHAYYLD+QNRR
Sbjct:  145 NADTPIAHGQTPLLTIDVWEHAYYLDYQNRR 175          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.358e-30
Identity = 57/131 (43.51%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLV 127          

HSP 2 Score: 46.9802 bits (110), Expect = 7.358e-30
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  PL  D + LLT+DVWEHAYY+D++N R
Sbjct:  141 NAGTPLTTDATPLLTVDVWEHAYYIDYRNAR 171          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.358e-30
Identity = 57/131 (43.51%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLV 127          

HSP 2 Score: 46.9802 bits (110), Expect = 7.358e-30
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  PL  D + LLT+DVWEHAYY+D++N R
Sbjct:  141 NAGTPLTTDATPLLTVDVWEHAYYIDYRNAR 171          
The following BLAST results are available for this feature:
BLAST of CN185845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
SODF_SOYBN7.186e-6356.47Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL2.218e-4554.39Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH1.758e-4250.00Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_ANASP5.054e-3546.21Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_PLEBO9.253e-3443.18Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNY34.517e-3346.40Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_LEGPH3.096e-3144.27Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_SYNE78.891e-3141.98Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_SALTY7.358e-3043.51Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI7.358e-3043.51Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185845 ID=CN185845; Name=CN185845; organism=Citrus sinensis; type=EST; length=793bp
GGGGGGGGGGGGGGGCTAGCGGGCCCCCTTGCTTTATCTGCTATAACCAA
AGCTGTAATATATAAGGCATGGCATCGGCCGCTTTCAGCAGCTTCATCTA
CTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGCAAGGAGTACGCTA
TTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGG
CCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAATG
CTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAG
CACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGA
GCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACA
AGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCAT
GACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTGG
TGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTC
TTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCC
TGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAA
TCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGA
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