CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:189..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.041e-50
Identity = 99/116 (85.34%), Postives = 103/116 (88.79%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCH SHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAG           VETFS+YPP GRFAVRDMRQTVAVGVIKNVEKKDPTG
Sbjct:  321 PAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 3.956e-50
Identity = 97/116 (83.62%), Postives = 103/116 (88.79%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+EAANFT+QVII+NHPGQIGNGYAPVLDCH SHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG           VETFS+YPP GRFAVRDMRQTVAVGVIKNVEKKDPTG
Sbjct:  321 PAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.167e-50
Identity = 96/116 (82.76%), Postives = 103/116 (88.79%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+EAANFTSQVIIMNHPGQIGNGYAPVLDCH SHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAG           VETF++YPP GRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  321 PAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.748e-50
Identity = 98/116 (84.48%), Postives = 102/116 (87.93%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCH SHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAG           VETFS YPP GRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  321 PAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.151e-49
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA++AANFTSQVIIMNHPGQIGNGYAPVLDCH SHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAG           VETF++YPP GRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  321 PAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.349e-49
Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+EAANFTSQVIIMNHPGQIGNGYAPVLDCH SHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG           VETFS YPP GRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  321 PAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.374e-49
Identity = 95/116 (81.90%), Postives = 102/116 (87.93%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+ AANFTSQVIIMNHPGQIGNGYAPVLDCH SHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAG           VETFS+YPP GRFAVRDMRQTVAVGVIK+V+KKDPTG
Sbjct:  321 PAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTG 436
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.745e-49
Identity = 94/116 (81.03%), Postives = 102/116 (87.93%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCH SHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAG           VETFS+YPP GRFAVRDMRQTVAVGVIKNV+KKDPTG
Sbjct:  321 PAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.273e-48
Identity = 95/116 (81.90%), Postives = 100/116 (86.21%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+EAANFT+QVIIMNHPGQIGNGYAPVLDCH SHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG           VETF  YPP GRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  321 PAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.835e-48
Identity = 96/116 (82.76%), Postives = 99/116 (85.34%), Query Frame = -2 
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+EAANFTSQVIIMNHPGQIGNGYAPVLDCH SHIAVKF+ELVTKIDRRSGKELE  PKFLKNGDAG           VETF+ YPP GRFAVRDMRQTVAVGVIK VEKKDPTG
Sbjct:  321 PAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTG 436
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_ORYSJ1.041e-5085.34Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_SOYBN3.956e-5083.62Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_VICFA5.167e-5082.76Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_MAIZE6.748e-5084.48Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_PEA1.151e-4981.90Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_MANES3.349e-4982.76Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_ARATH4.374e-4981.90Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC9.745e-4981.03Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A2_DAUCA1.273e-4881.90Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_WHEAT2.835e-4882.76Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
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