CN185831

Overview
NameCN185831
Unique NameCN185831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6946 contig Csv1_Contig6946:175..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.377e-45
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 1
Query:  151 YWYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            Y +KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEAFAIYDVMGYVKPPIFTLCVGNAWGEA LLL AGAKG
Sbjct:  109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKG 204          

HSP 2 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:    3 SDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASVLVQESNCLLG 182
            SD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLAS L +     LG
Sbjct:   60 SDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLG 119          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.533e-25
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RI+YLGM    S          VTELI+A+ LYL++++ EKPIY YINSTGT+   G+ +GYETEAFAI D M Y+KPP+ T+C+G A G A ++L  G  G
Sbjct:   31 KERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPG 134          

HSP 2 Score: 27.335 bits (59), Expect = 5.533e-25
Identity = 11/28 (39.29%), Postives = 17/28 (60.71%), Query Frame = 3
Query:   99 PFTSGTAWEQPPPDLASVLVQESNCLLG 182
            P+    ++  PPPDL S+L++E    LG
Sbjct:   11 PYYGDVSYRTPPPDLPSLLLKERIIYLG 38          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.535e-25
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K RIVYLGM    S          VT+LI+A+ LYLQ++D +KPIY YINSTGT+   G+ +G+ETEAFAI D + Y+KPP+ T+C+G A G A ++L +G KG
Sbjct:   29 KERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKG 132          

HSP 2 Score: 25.7942 bits (55), Expect = 5.535e-25
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  117 AWEQPPPDLASVLVQESNCLLG 182
            A++ PPPDL S+L++E    LG
Sbjct:   15 AFKTPPPDLESLLLKERIVYLG 36          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.650e-24
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 1
Query:  166 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            RIVY+GM  VP+VTEL++AE +YLQ+ D ++PIY+YINSTGTT+  GE +G E+E FAIYD +  +K  + T+CVG A G+A LLL AG KG
Sbjct:  130 RIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKG 221          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.461e-20
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  166 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            RI YLGM  VP+VTEL++A+F++L Y++  KPIYLYINS GT  +  E +G ETEA+AI D + Y K  ++T+  G A+G+A +LL  G KG
Sbjct:  180 RICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKG 271          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP2_GLOVI (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.747e-18
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  166 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            RIVYLG      V EL++A+ LYL+ ED  KPI +YINS G        G+ET AFA+YD M +V+ PI T+C+G A G + LL+ AG KG
Sbjct:   37 RIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVA------GFETSAFAVYDTMRHVRMPIKTICLGLAGGFSALLMAAGTKG 121          

HSP 2 Score: 23.8682 bits (50), Expect = 8.747e-18
Identity = 10/27 (37.04%), Postives = 15/27 (55.56%), Query Frame = 3
Query:  102 FTSGTAWEQPPPDLASVLVQESNCLLG 182
            ++    +  PPPDL S+L+ E    LG
Sbjct:   16 YSGDYGFRTPPPDLPSLLLNERIVYLG 42          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_THEPX (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.908e-16
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T  FAIYD M Y+KP + TLCVG A   A  LL AGAKG
Sbjct:   26 KDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_THEP3 (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpP PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.908e-16
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T  FAIYD M Y+KP + TLCVG A   A  LL AGAKG
Sbjct:   26 KDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GSITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_THETN (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter tengcongensis GN=clpP PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.533e-15
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+KP + TLCVG A   A  LL AGAKG
Sbjct:   26 KDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPG--------GSITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKG 110          
BLAST of CN185831 vs. ExPASy Swiss-Prot
Match: CLPP_FUSNN (ATP-dependent Clp protease proteolytic subunit OS=Fusobacterium nucleatum subsp. nucleatum GN=clpP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.308e-15
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  160 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEATLLLGAGAKG 438
            K+RI+++G +   +V   I+A+ LYL+ ED EK I +YINS G        G  T+  AIYD M Y+KP + T+CVG A      LL AGAKG
Sbjct:   25 KDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYINSPG--------GSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAFLLAAGAKG 109          
The following BLAST results are available for this feature:
BLAST of CN185831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
CLPR4_ARATH1.377e-4591.67ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR_SYNE75.533e-2551.92Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR_SYNY35.535e-2551.92Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR3_ARATH6.650e-2458.70ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR1_ARATH4.461e-2052.17ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP2_GLOVI8.747e-1850.55ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THEPX3.908e-1648.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP33.908e-1648.39ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THETN2.533e-1547.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FUSNN3.308e-1545.16ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185831 ID=CN185831; Name=CN185831; organism=Citrus sinensis; type=EST; length=438bp
ATTCCGACTTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGAT
TCATTCTGCAAGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCC
TTTTACTAGTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCGG
TATTGGTACAAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTC
TGTCACAGAGCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATG
TTGAGAAGCCCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGT
GGCGAGAAGTTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTAT
GGGTTATGTCAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGG
GTGAGGCAACGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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