CN185828

Overview
NameCN185828
Unique NameCN185828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2507 contig Csv1_Contig2507:1..271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.980e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 2
Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADDSYLE
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLE 35          
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.867e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 2
Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADDSYL+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLD 35          
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.513e-11
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  161 TTMNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            +TMN +YDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    2 STMNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 38          
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-11
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 2
Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRF+DDSY+E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVE 35          
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-11
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  161 TTMNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            ++MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 38          
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-11
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  161 TTMNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            ++MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 38          
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-11
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  161 TTMNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            ++MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 38          
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-11
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  161 TTMNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            ++MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 38          
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-11
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  161 TTMNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            ++MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 38          
BLAST of CN185828 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2
Query:  167 MNNEYDYLFKLLLIGDSGVGQSCLLLRFADDSYLE 271
            MN EYDYLFKLLLIGDSGVG+SCLLLRFADD+Y E
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 35          
The following BLAST results are available for this feature:
BLAST of CN185828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RIC1_ORYSJ3.980e-1294.29Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
YPTM2_MAIZE8.867e-1291.43GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB1A_LYMST1.513e-1183.78Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RBD2A_ARATH1.975e-1188.57Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB1A_RAT1.975e-1183.78Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG1.975e-1183.78Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE1.975e-1183.78Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.975e-1183.78Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.975e-1183.78Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
YPTV1_VOLCA3.370e-1188.57GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185828 ID=CN185828; Name=CN185828; organism=Citrus sinensis; type=EST; length=272bp
ATGGTCAATTTCCCCAGTTTCTCTCCTCTTTTTAAAATCCCCATCCATCT
CTCCCTACGTCGAAGCAGTTTTCATTTGCGATCAATTTTTCTTGCCGGAA
ATTAAAATTTCTCATCATCCTCGTCGAAGTTTCTGTGATTCATTCGATCC
AACGCACGGCACGACCATGAATAACGAATACGATTATTTGTTTAAGCTTT
TGCTCATAGGCGATTCTGGTGTTGGCCAATCGTGTCTACTTTTGAGGTTT
GCTGATGATTCTTATCTGGAAA
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