CN185819

Overview
NameCN185819
Unique NameCN185819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185819_ssr225 microsatellite CN185819_ssr225:225..234. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1790 contig Csv1_Contig1790:20..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185819 vs. ExPASy Swiss-Prot
Match: SERC3_PONAB (Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 48/179 (26.82%), Postives = 80/179 (44.69%), Query Frame = 2 
Query:  200 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVAPLVVSLVCYVLT 688
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KDPR ++H+G W  KI     +++  F++P     S +  +   G+               H WN++WV   E+     WY A L  +   Y+L+
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDPRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILS 217
[Close]
BLAST of CN185819 vs. ExPASy Swiss-Prot
Match: SERIC_MONBE (Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 51/168 (30.36%), Postives = 76/168 (45.24%), Query Frame = 2 
Query:  194 SARIAYCGLFALSLIVSWIL--REVAAPLMEKLPWINHFHKTPSR----------------EWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNE--IVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ 637
            S RI Y  LF LS I +WI+  ++V+  LM+    +  +H T  R                 W E   V+R+     LF   LS+  +GV + KDPR SLH+G W +K+I     ++  FF+ N   I + +  I   G+               + WND+WVG  E+
Sbjct:   43 STRITYAILFFLSSIAAWIMLDKDVSKGLMK----VCCYHSTLFRLVLFTQPAIKTTTNVVPWGEL-GVMRIMFSVCLFHLFLSLCTIGVSSSKDPRSSLHNGMWFIKLILLVGAMVGSFFISNSFFIGASWSWIGLVGAVLFMIVQFILLVDFAYSWNDSWVGKLEE 205
The following BLAST results are available for this feature:
BLAST of CN185819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SERC3_PONAB2.204e-1126.82Serine incorporator 3 OS=Pongo abelii GN=SERINC3 P... [more]
SERIC_MONBE8.376e-1130.36Probable serine incorporator OS=Monosiga brevicoll... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185819 ID=CN185819; Name=CN185819; organism=Citrus sinensis; type=EST; length=699bp
AGGCTAATATTCTTCGCTTAGCGCTTGCGATCATCGCCTTTTCTATTTCA
CTTTCCCTTTCTCCTTCAAATTCAATCAAATATCCCAGTTTGTGAGAGAA
GAGAAGATGTGGGCGGCGTCTTGTCTTGCGTCGTGCTGTGCGGCGTGCGC
GTGTGACGCGTGTCGCTCGGCGGTGTCGGGGATCAGCAGGAGGTCAGCTA
GGATTGCTTACTGCGGGCTGTTTGCTCTCTCTCTGATCGTTTCGTGGATT
CTTCGTGAAGTCGCCGCTCCACTCATGGAGAAGCTCCCTTGGATTAATCA
TTTTCATAAGACACCTAGCAGGGAGTGGTTTGAAACTGATGCTGTTCTGC
GAGTTAGCTTGGGAAATTTTCTCTTTTTCACTATTTTGTCAATTTTAATG
GTTGGCGTGAAAAATCAGAAAGATCCCCGTGATAGCTTGCACCACGGTGG
ATGGATGATGAAAATTATTTGTTGGTGCCTTCTGGTGATCTTTATGTTTT
TCCTTCCAAATGAGATTGTCAGCTTCTATGAGTCAATATCAAAGTTTGGC
TCGGGTTTGTTTCTTCTTGTTCAAGTTGTCCTTTTATTGGACTTTGTTCA
CAGATGGAATGACACGTGGGTTGGATATGATGAGCAGTTCTGGTATGTTG
CCCCATTGGTTGTTTCTCTTGTTTGTTACGTGCTGACATTTGGGCTTCT
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