DC900044

Overview
NameDC900044
Unique NameDC900044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12693 contig Csv1_Contig12693:388..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.343e-24
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            +KFVVHN +ELELLMMHNRTYCAEIAHNVSTKKRK IVERA+QLDVVVTN+LARLRSQE+E
Sbjct:   73 KKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133          
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.519e-23
Identity = 51/61 (83.61%), Postives = 58/61 (95.08%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            +KF+VHN +ELELLMMHNRTYCAEIAHN+STKKRK IVERA+QLDVVV+NKL RLRSQE+E
Sbjct:   73 KKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133          
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.590e-18
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            RK +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN  ARLRSQE E
Sbjct:   74 RKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134          
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.245e-17
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            RKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   75 RKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.245e-17
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            RKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   75 RKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL32_MOUSE (60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.245e-17
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            RKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   75 RKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL32_MACFA (60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.245e-17
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            RKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   75 RKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.245e-17
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            RKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   75 RKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.627e-17
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            +KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   75 KKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135          
BLAST of DC900044 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.627e-17
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 2
Query:    5 RKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 187
            RKF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + +TN  ARLRS+E E
Sbjct:   75 RKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135          
The following BLAST results are available for this feature:
BLAST of DC900044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL321_ARATH2.343e-2488.5260S ribosomal protein L32-1 OS=Arabidopsis thalian... [more]
RL322_ARATH1.519e-2383.6160S ribosomal protein L32-2 OS=Arabidopsis thalian... [more]
RL32_SPOFR5.590e-1873.7760S ribosomal protein L32 OS=Spodoptera frugiperda... [more]
RL32_RAT1.245e-1772.1360S ribosomal protein L32 OS=Rattus norvegicus GN=... [more]
RL32_PIG1.245e-1772.1360S ribosomal protein L32 OS=Sus scrofa GN=RPL32 P... [more]
RL32_MOUSE1.245e-1772.1360S ribosomal protein L32 OS=Mus musculus GN=Rpl32... [more]
RL32_MACFA1.245e-1772.1360S ribosomal protein L32 OS=Macaca fascicularis G... [more]
RL32_HUMAN1.245e-1772.1360S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_ICTPU1.627e-1770.4960S ribosomal protein L32 OS=Ictalurus punctatus G... [more]
RL32_BOVIN1.627e-1770.4960S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]

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Properties
Property NameValue
Genbank descriptionDC900044 VSS Citrus sinensis cDNA clone VS27Q51 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900044 ID=DC900044|Name=DC900044|organism=Citrus sinensis|type=EST|length=488bp
TTCAAGGAAGTTTGTTGTGCACAATGTCAATGAACTGGAACTCTTGATGA
TGCACAACAGGACTTATTGTGCTGAGATAGCCCACAACGTATCAACCAAG
AAGAGAAAGGAGATTGTCGAGCGTGCTGCACAATTGGATGTTGTGGTCAC
CAACAAATTGGCCAGGTTGCGCAGCCAGGAGGAGGAGTAAAAATTGGTTT
CTATATTGTGTTAGTGTTTGCTTTTTGGCCAAATGTTTCCTAGGTTGTCT
TTGGAATGGATGAACATTTCCAGGGTTGAATTATGATGTATTTTCTATTT
TTGTCACCTGAATGATATTTTGAATTTGTTGTTTTTTGCGGAGCATGATT
AATGTTATGTCAACTTAGGAGTTAAGGTTTATGGCCAAGCCTTTTATTAA
CATTGTTTTGCATATTTTGCCGAAACTATTAGTGGGCAATGTTAAGCGTA
TGATGTTTAATAGCGTTAATTTGTTGACTGTTTCTATT
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