CN185800

Overview
NameCN185800
Unique NameCN185800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:60..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.013e-84
Identity = 144/157 (91.72%), Postives = 145/157 (92.36%), Query Frame = 2
Query:  152 FMGLPCHHSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDEQDNYVVIKHAALFTSTIMSKLL 622
            F G P   SLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMT RYMTDMITYADTD    GAGSAGLSCAYELSKNPNIQIAI EQSVSPGGGAWL GQLFSAMVVRKPAHIFLDELGI+YDEQDNYVVIKHAALFTSTIMSKLL
Sbjct:   25 FHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLL 181          

HSP 2 Score: 52.7582 bits (125), Expect = 2.013e-84
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1
Query:  103 FAPSVSSTTNKLFDSSFHGAPMSP 174
            FAPSVSSTTNKLFDSSFHGAPMSP
Sbjct:    9 FAPSVSSTTNKLFDSSFHGAPMSP 32          
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.688e-60
Identity = 117/157 (74.52%), Postives = 129/157 (82.17%), Query Frame = 2
Query:  152 FMGLPCHHSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDEQDNYVVIKHAALFTSTIMSKLL 622
            F G P   S +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMT RYM DMITYADTD    GAGS+GL C YELSKNP++Q+AI EQSVSPGGGAWL GQLFS MVVRKPAH+FLDELGI YDEQDNYVVIKHAALFTSTIMSKLL
Sbjct:   22 FYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVVRKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLL 177          
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.141e-57
Identity = 110/152 (72.37%), Postives = 125/152 (82.24%), Query Frame = 2
Query:  170 HHSLLRLQPIKSS-RPNNLSISASASPPYDLNTFKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDEQDNYVVIKHAALFTSTIMSKLL 622
            H S +   PI    +P + S+ A+ +  YDLN F FDPIKESIVSREMT RYMTDMITYA+TD    GAGSAGLS AYE+SKNPN+Q+AI EQSVSPGGGAWL GQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTSTIMSKLL
Sbjct:   24 HGSAISAAPISIGLKPRSFSVRATTAG-YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLL 174          

HSP 2 Score: 26.1794 bits (56), Expect = 1.141e-57
Identity = 13/21 (61.90%), Postives = 17/21 (80.95%), Query Frame = 1
Query:  112 SVSSTT-NKLFDSSFHGAPMS 171
            S+SST   +LFDSSFHG+ +S
Sbjct:    9 SLSSTKPQRLFDSSFHGSAIS 29          
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.895e-55
Identity = 104/130 (80.00%), Postives = 116/130 (89.23%), Query Frame = 2
Query:  233 ASASPPYDLNTFKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDEQDNYVVIKHAALFTSTIMSKLL 622
            +S++PPYDL +F+F PIKESIVSREMT RYMTDMITYADTD    GAGSAGLSCAYELSK+P + IAI EQSVSPGGGAWL GQLFSAMVVRKPAH+FLDELG+ YDE ++YVVIKHAALFTST+MS LL
Sbjct:   51 SSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLL 180          
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.292e-54
Identity = 105/143 (73.43%), Postives = 120/143 (83.92%), Query Frame = 2
Query:  194 PIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDEQDNYVVIKHAALFTSTIMSKLL 622
            P     P   SIS S +PPYDL +F+F PIKESIVSREMT RYMTDMIT+ADTD    GAGSAGLSCAYELSK+P + +AI EQSVSPGGGAWL GQLFSAMVVR+PAH+FLDELG+ YDE ++YVV+KHAALFTST+MS+LL
Sbjct:   36 PRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQLFSAMVVRRPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLL 177          
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.305e-37
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 2
Query:  266 FKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDEQDNYVVIKHAALFTSTIMSKLL 622
            FKF PI+ES VSR MT RY  D+  YA++D    GAGS GLS AY L K  P+++IAI E SVSPGGGAWL GQLFSAM++RKPA  FL E+G+ Y+++ NYVV+KHAALFTSTIMSK+L
Sbjct:   44 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMIMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVL 163          
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.305e-37
Identity = 76/132 (57.58%), Postives = 104/132 (78.79%), Query Frame = 2
Query:  233 ASASPPYDLN-TFKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDEQDNYVVIKHAALFTSTIMSKLL 622
            + A P Y L+ +F F PI+ES VSR MT RY +D+  YA++D    GAGSAGL+ AY + ++ P+++IAI E SV+PGGGAWL GQLFSAMVVRKPA +FL+E+G+ Y+++ +YVV+KHAALFTST+M++ L
Sbjct:   37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTL 168          
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.536e-36
Identity = 78/120 (65.00%), Postives = 93/120 (77.50%), Query Frame = 2
Query:  266 FKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDEQDNYVVIKHAALFTSTIMSKLL 622
            FKF PI+ES VSR MT RY  D+  YA++D    GAGS GLS  Y L K  P+++IAI E SVSPGGGAWL GQLFSAMV+RKPA  FL E+G+ Y+++ NYVV+KHAALFTSTIMSK+L
Sbjct:   48 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMVMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVL 167          
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.031e-36
Identity = 78/122 (63.93%), Postives = 96/122 (78.69%), Query Frame = 2
Query:  266 FKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDE--QDNYVVIKHAALFTSTIMSKLL 622
            FKF PI+ES VSR MT RY  D+  YA++D    GAGS GLS AY L+K  P+++IAI E SVSPGGGAWL GQLFSAMV+R+PA +FL+ELG+ Y+E    NYVV+KHA+LFTST+MSK+L
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQLFSAMVMRRPAEVFLNELGVPYEEDANPNYVVVKHASLFTSTLMSKVL 169          
BLAST of CN185800 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.755e-35
Identity = 73/124 (58.87%), Postives = 97/124 (78.23%), Query Frame = 2
Query:  254 DLNTFKFDPIKESIVSREMTLRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAITEQSVSPGGGAWLVGQLFSAMVVRKPAHIFLDELGINYDEQDNYVVIKHAALFTSTIMSKLL 622
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ I E SV+PGGG+WL GQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++SK+L
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVL 157          
The following BLAST results are available for this feature:
BLAST of CN185800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
THI4_CITSI2.013e-8491.72Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL2.688e-6074.52Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.141e-5772.37Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE9.895e-5580.00Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.292e-5473.43Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSOX9.305e-3765.00Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI2_SCHPO9.305e-3757.58Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_FUSSH3.536e-3665.00Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR6.031e-3663.93Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_YEAST1.755e-3558.87Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001O05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185800 ID=CN185800; Name=CN185800; organism=Citrus sinensis; type=EST; length=623bp
ATTACTGCTGCAAATCAAATTACTTCTCATTATCAAACTCCTTAGCAGCA
GGGGAAGGAGGGGTAAAAAAAAAAAACCATGGCAGCCATGGCTTCTACAG
CTTTCGCTCCTTCAGTTTCATCCACCACCAATAAGCTCTTTGACTCATCC
TTTCATGGGGCTCCCATGTCACCATTCTCTTCTACGTCTTCAACCCATCA
AATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCT
TATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTC
TCGTGAAATGACACTCAGGTACATGACGGACATGATCACTTATGCTGACA
CTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTAT
GAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTACCGAACAGTCTGT
TAGCCCCGGCGGCGGCGCGTGGCTCGTTGGACAGCTCTTCTCTGCCATGG
TTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCAACTAC
GATGAGCAAGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTC
CACTATAATGAGCAAGCTCCTGG
back to top