CN185790

Overview
NameCN185790
Unique NameCN185790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185790_ssr100 microsatellite CN185790_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9776 contig Csv1_Contig9776:610..1311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.014e-45
Identity = 89/127 (70.08%), Postives = 96/127 (75.59%), Query Frame = -1 
Query:  328 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGGIADGN--------SKGPFPMGTKPHCYSPFTNPSAAC 684
            ++QA ARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL             QP YMHMPAATLTMCPSCER+GGG   G+        +KG F + TKP  Y+PFTNPSAAC
Sbjct:  152 QKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCERLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNPSAAC 278

HSP 2 Score: 26.9498 bits (58), Expect = 1.014e-45
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            K HSTLNPKQK +L +
Sbjct:  143 KLHSTLNPKQKQALAR 158
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.292e-42
Identity = 86/136 (63.24%), Postives = 95/136 (69.85%), Query Frame = -1 
Query:  328 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGG----------------IADGN-SKGPFPMGTKPHCYSPFTNPSAAC 684
            ++Q  ARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL DEN RL             QP YMHMPA+TLT CPSCERIGGG                I DG+ +KG F + +KPH ++PFTNPSAAC
Sbjct:  139 QKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMPASTLTKCPSCERIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNPSAAC 274

HSP 2 Score: 26.5646 bits (57), Expect = 1.292e-42
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            K HSTLNPKQK  L +
Sbjct:  130 KDHSTLNPKQKQVLAR 145
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.411e-35
Identity = 68/118 (57.63%), Postives = 81/118 (68.64%), Query Frame = -1 
Query:  331 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPFTNPSAA 684
            ++ A A+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRLH            +P YMH+PA TL+MCPSCER+    A  ++  P          SP   P+AA
Sbjct:  200 QKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERVASNPATASTSAP------AAATSPAAAPTAA 311

HSP 2 Score: 30.0314 bits (66), Expect = 6.411e-35
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            K+HSTLNPKQK +L K
Sbjct:  191 KEHSTLNPKQKVALAK 206
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 6.411e-35
Identity = 68/118 (57.63%), Postives = 81/118 (68.64%), Query Frame = -1 
Query:  331 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPFTNPSAA 684
            ++ A A+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRLH            +P YMH+PA TL+MCPSCER+    A  ++  P          SP   P+AA
Sbjct:  200 QKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERVASNPATASTSAP------AAATSPAAAPTAA 311

HSP 2 Score: 30.0314 bits (66), Expect = 6.411e-35
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            K+HSTLNPKQK +L K
Sbjct:  191 KEHSTLNPKQKVALAK 206
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.090e-34
Identity = 77/142 (54.23%), Postives = 88/142 (61.97%), Query Frame = -1 
Query:  328 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH----------------XXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGG-------IADGNSKGPFPMGTKPHCYSPFTNPSAAC 684
            ++ A A+QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+ENRRL                              P YM +PAATLT+CPSCER+GG         ADG   GP    T  H ++PFT+ SAAC
Sbjct:  153 QKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPASAAKVVAADGTKAGP-GRTTTHHFFNPFTH-SAAC 292

HSP 2 Score: 28.8758 bits (63), Expect = 4.090e-34
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            ++HSTLNPKQK +L K
Sbjct:  144 REHSTLNPKQKVALAK 159
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.090e-34
Identity = 77/142 (54.23%), Postives = 88/142 (61.97%), Query Frame = -1 
Query:  328 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH----------------XXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGG-------IADGNSKGPFPMGTKPHCYSPFTNPSAAC 684
            ++ A A+QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+ENRRL                              P YM +PAATLT+CPSCER+GG         ADG   GP    T  H ++PFT+ SAAC
Sbjct:  153 QKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPASAAKVVAADGTKAGP-GRTTTHHFFNPFTH-SAAC 292

HSP 2 Score: 28.8758 bits (63), Expect = 4.090e-34
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            ++HSTLNPKQK +L K
Sbjct:  144 REHSTLNPKQKVALAK 159
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.375e-33
Identity = 65/118 (55.08%), Postives = 77/118 (65.25%), Query Frame = -1 
Query:  331 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPFTNPSAA 684
            ++ A A+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRL              P YMH+PA TL+MCPSCER+    A   +       T     +P +   AA
Sbjct:  203 QKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAA 320

HSP 2 Score: 29.6462 bits (65), Expect = 3.375e-33
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            K+HSTLNPKQK +L K
Sbjct:  194 KEHSTLNPKQKLALAK 209
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.390e-33
Identity = 65/118 (55.08%), Postives = 77/118 (65.25%), Query Frame = -1 
Query:  331 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPFTNPSAA 684
            ++ A A+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRL              P YMH+PA TL+MCPSCER+    A   +       T     +P +   AA
Sbjct:  116 QKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAA 233

HSP 2 Score: 29.6462 bits (65), Expect = 3.390e-33
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            K+HSTLNPKQK +L K
Sbjct:  107 KEHSTLNPKQKLALAK 122
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.029e-31
Identity = 71/129 (55.04%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  328 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHM------PAATLTMCPSCERIGGGIADGNSKGPFP----MGTKPHCYSPFTNPSAAC 684
            ++ A A+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLT+ENRRLH                  M      PAATL++CPSCER+    A G S           T PH +SPF   SAAC
Sbjct:  120 QKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERLATAAAAGASPTAAADRTNKPTAPHLFSPFAK-SAAC 247

HSP 2 Score: 30.0314 bits (66), Expect = 3.029e-31
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            K+HSTLNPKQK +L K
Sbjct:  111 KEHSTLNPKQKVALAK 126
[Close]
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.134e-30
Identity = 71/133 (53.38%), Postives = 81/133 (60.90%), Query Frame = -1 
Query:  328 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMHM------PAATLTMCPSCERIGGGIADGNSKGPFPMG--------TKPHCYSPFTNPSAAC 684
            ++ A A+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLT+ENRRLH                  M      PAATL++CPSCER+    A   + G  P          T PH +SPF   SAAC
Sbjct:  120 QKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERLATAAA---AAGASPTAAADRTNKPTAPHLFSPFAK-SAAC 248

HSP 2 Score: 30.0314 bits (66), Expect = 1.134e-30
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -3 
Query:  665 KQHSTLNPKQKASLGK 712
            K+HSTLNPKQK +L K
Sbjct:  111 KEHSTLNPKQKVALAK 126
The following BLAST results are available for this feature:
BLAST of CN185790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HAT22_ARATH1.014e-4570.08Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT9_ARATH1.292e-4263.24Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HOX27_ORYSJ6.411e-3557.63Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI6.411e-3557.63Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX19_ORYSJ4.090e-3454.23Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI4.090e-3454.23Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX11_ORYSJ3.375e-3355.08Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI3.390e-3355.08Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX15_ORYSJ3.029e-3155.04Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI1.134e-3053.38Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185790 ID=CN185790; Name=CN185790; organism=Citrus sinensis; type=EST; length=714bp
TTTTTTTTTTTTTTTTTAGTTAAAACTGCTTTCATAGATATAACTTGCTT
TTGTTTCACAATTTACAAACATATAAAAAAAAAGAAAAAAAGAAAAAAAG
ATGATGATGATTTTAAAAGGAGATTAATTAGCAATTAACATAAAACTATA
TATAATCTGGAGCATCTAGTAATATTTTCTACAGTTTAATTAATCACACT
AATATCTCTGATCACTACAAGCCCTGACCCAAAAAAAATAGCGGGGTTTG
TTGGAGTGTTCCATATAATTTTTATAATTTAATTTAATCTGATTTTCTTT
TCCTAATCCTATCTAACAACTCAATCAACAAGCTGCTGAAGGATTGGTGA
AGGGACTATAGCAGTGAGGCTTAGTACCCATGGGAAATGGGCCCTTCGAG
TTTCCATCGGCGATGCCGCCGCCGATCCGTTCACAAGAAGGGCACATCGT
CAGGGTAGCTGCCGGCATATGCATGTAAAGAGGCTGAGCTAGCTTCAGAG
CTTTGAGTTCTTGTAGCTCCTTGTGCAGCCTTCTGTTTTCATCAGTTAGG
GTTTCACAGCATTTCTTCAAGAATTCACAGTCCACTTCTGTTTGCTTAAG
CTTTGTCCTGGCTCTCCTATTCTGGAACCATACTTCAACTTGTCTTGGTC
GTAGGTTTAGTTGCCTTGCCCAAGCTTGCCTTTTGCTTAGGATTGAGAGT
GCTATGCTGTTTGA
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