CN185787

Overview
NameCN185787
Unique NameCN185787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11459 contig Csv1_Contig11459:14..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 108/203 (53.20%), Postives = 118/203 (58.13%), Query Frame = 1
Query:   88 MGFDDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPETATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASD--EDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            MGFDD CNTGLVLGLG        P+   NN N    Q          EPSL+L L G+               S+ V  G ++           L RQ S HS VS SFSSGRVVKRERD                SD  EDE+G++ARKKLRLTK+QSALLEESFK HSTLNPKQKQ LARQLNLRPRQVEVWF NRRART
Sbjct:    1 MGFDDTCNTGLVLGLG--------PSPIPNNYNSTIRQSSVYK----LEPSLTLCLSGD--------------PSVTVVTGADQ-----------LCRQTSSHSGVS-SFSSGRVVKRERDGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRART 165          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.690e-37
Identity = 105/213 (49.30%), Postives = 126/213 (59.15%), Query Frame = 1
Query:   88 MGFDDGCNTGLVLGLGFASAIETTPTNKANNI----NIVNHQQLQLPKGTCFEPSLSLGLPGEIYPETATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXX------RASDE--DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            MG DD CNTGLVLGLG    +  TP N  + I    + V+H+ ++L      +PSL+L L GE                      Y+    AG  +   + RQ S HS +S SFSSGRV KRER++                   R SD+  DE+GV+ARKKLRLTK+QSALLE++FK HSTLNPKQKQALARQLNLRPRQVEVWF NRRART
Sbjct:    1 MGLDDSCNTGLVLGLG----LSPTPNNYNHAIKKSSSTVDHRFIRL------DPSLTLSLSGE---------------------SYKIKTGAGAGDQ--ICRQTSSHSGIS-SFSSGRV-KREREISGGDGEEEAEETTERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRART 178          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 78/192 (40.62%), Postives = 109/192 (56.77%), Query Frame = 1
Query:  115 GLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPETATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            GL LGL F        +N + ++   +     L + + +  S +  +P     +++   T+     IDVN+    +A  G  +  +    +SP+S VS+S  +G+  +RE D              R   +DEDG N+RKKLRL+K+QSA+LEE+FK HSTLNPKQKQALA+QL LR RQVEVWF NRRART
Sbjct:    9 GLSLGLNFPKKQINLKSNPSVSVT-PSSSSFGLFRRSSWNESFTSSVPNS---DSSQKETRTFIRGIDVNRP-PSTAEYGDEDAGV----SSPNSTVSSS--TGKRSEREEDTDPQGS--------RGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRART 181          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 84/213 (39.44%), Postives = 105/213 (49.30%), Query Frame = 1
Query:  100 DGCNTGLVLGLGF---ASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEI--YPETATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSG-----------RVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            DG    LVLGLG    A         +    ++V   +         EPS+ L L   +  +  + T  ++  +   DVN+    +A A   E       A+P  + S + S G           R                     RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWF NRRART
Sbjct:   15 DGGRLELVLGLGVGVGAGVRRGEEEERGRREDVVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGQGLRGHAEAAAQGGGGGGGGERSSSRASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRART 226          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 84/213 (39.44%), Postives = 105/213 (49.30%), Query Frame = 1
Query:  100 DGCNTGLVLGLGF---ASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEI--YPETATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSG-----------RVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            DG    LVLGLG    A         +    ++V   +         EPS+ L L   +  +  + T  ++  +   DVN+    +A A   E       A+P  + S + S G           R                     RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWF NRRART
Sbjct:   15 DGGRLELVLGLGVGVGAGVRRGEEEERGRREDVVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGHGLRGHAEAAAQGGGGGGGGERSSSRASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRART 226          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1
Query:  493 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWF NRRART
Sbjct:  165 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRART 229          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1
Query:  493 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWF NRRART
Sbjct:   78 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRART 142          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 79/200 (39.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   97 DDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTC--FEPSLSLGLPGEIYPETATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            D G   GL LG G     +    ++          +   P   C   EPSL+L LP +     A   T   S                          A   S++S   ++   VKRER               R  D+D+DG + RKKLRLTKEQSALLE+ F++HSTLNPKQK ALA+QLNLRPRQVEVWF NRRART
Sbjct:   11 DAGLALGLSLGGGGGGTTDAAAAHRGGC-------RRPSPSSQCPPLEPSLTLSLPDDAAAGAAATATATASGG---------------------GGPAHSVSSLSVGAAAAAAVKRERAEEADGERVSSTAAGR--DDDDDG-STRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRART 179          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 79/200 (39.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   97 DDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTC--FEPSLSLGLPGEIYPETATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            D G   GL LG G     +    ++          +   P   C   EPSL+L LP +     A   T   S                          A   S++S   ++   VKRER               R  D+D+DG + RKKLRLTKEQSALLE+ F++HSTLNPKQK ALA+QLNLRPRQVEVWF NRRART
Sbjct:   11 DAGLALGLSLGGGGGGTTDAAAAHRGGC-------RRPSPSSQCPPLEPSLTLSLPDDAAAGAAATATATASGG---------------------GGPAHSVSSLSVGAAAAAAVKRERAEEADGERVSSTAAGR--DDDDDG-STRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRART 179          
BLAST of CN185787 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 1
Query:  496 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFPNRRART 690
            A+ +D++G N+RKKLRL+KEQSALLE+ FK+HSTLNPKQK ALA+QLNLRPRQVEVWF NRRART
Sbjct:   82 AAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRART 146          
The following BLAST results are available for this feature:
BLAST of CN185787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HAT9_ARATH9.335e-3953.20Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HAT22_ARATH6.690e-3749.30Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT4_ARATH1.309e-2440.63Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HOX27_ORYSJ6.495e-2439.44Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI6.495e-2439.44Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX11_ORYSJ6.495e-2486.36Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI6.495e-2486.36Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX19_ORYSJ4.210e-2339.50Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI4.210e-2339.50Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX15_ORYSJ7.181e-2378.46Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185787 ID=CN185787; Name=CN185787; organism=Citrus sinensis; type=EST; length=692bp
ATGCCTCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCTTCAGAAGTCC
CGAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATG
ATGGGTGTAACACAGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATA
GAAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCACCA
GCAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGG
GCCTTCCTGGTGAGATTTACCCTGAGACTGCTACTGCTACTACCAAAAAG
AATAGTAATAGTATTGATGTGAACAAAGGTTACGAGGAATCCGCAGCAGC
AGGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTG
CTGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGAC
CTTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCATCAAGAGCCAG
TGATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGACTCACCA
AAGAACAGTCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCTC
AATCCTAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGACCAAG
ACAAGTTGAAGTATGGTTCCCGAATAGGAGAGCCAGGACAAA
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