CN185782

Overview
NameCN185782
Unique NameCN185782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12765 contig Csv1_Contig12765:31..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185782 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.536e-39
Identity = 88/175 (50.29%), Postives = 111/175 (63.43%), Query Frame = 2 
Query:   53 MALARLALRNVQQRVSTSSPSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAAND-EKKQDREVAVTEKXXXXXXXXXXXXXXXXXNND------IPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG 556
            MALARLALRN+QQ++S   PSL      +G+   S   G+   + +   L RFMAT+A + E K + EV+V+EK                  N        P L EFFP  +GN L+QATEN+NRIF+N N  P QLMG+VKEQDDCYKLRY+VPGL K+DVKIT++DG+LTIKG
Sbjct:    1 MALARLALRNLQQKLS---PSL------MGQ---SCERGLVGNRHNPMKLNRFMATSAGEQEDKMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKG 163

HSP 2 Score: 38.1206 bits (87), Expect = 3.536e-39
Identity = 15/19 (78.95%), Postives = 18/19 (94.74%), Query Frame = 3 
Query:  612 SYGYYNTSLALPDDAKADE 668
            SYGYYNTSL+LPDDAK ++
Sbjct:  184 SYGYYNTSLSLPDDAKVED 202
The following BLAST results are available for this feature:
BLAST of CN185782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HS26M_ARATH3.536e-3950.2926.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185782 ID=CN185782; Name=CN185782; organism=Citrus sinensis; type=EST; length=670bp
GAGGGACGAACAACCCAATTTCTCAAAAAACTCCCCTAGTTACCGAAAAA
AAATGGCTTTGGCTCGTTTGGCTTTGAGGAACGTGCAGCAAAGAGTGTCA
ACTTCTTCCCCTTCTCTGGCAAATTTGCATAATAATCTTGGTGAGAGAAG
TGCTAGTACCATCGGTGGTGTACAAAGGCAAAAGTGGAGTAATGAGTTGT
TGAAGAGGTTCATGGCAACAGCTGCCAATGATGAGAAAAAACAAGACAGA
GAAGTCGCCGTGACTGAAAAAAGATCAAGGCTCTTTCCAAGGAGAAGAGG
CAGGAGGGGGAGTCTTTGGAGGAACAATGACATTCCCGTACTTGCTGAGT
TCTTTCCTTCAGGGCTTGGAAATGCACTCATGCAAGCAACCGAAAACATT
AACAGGATATTCGAAAACTTGAACTTCACACCATCACAACTCATGGGGCG
GGTGAAAGAGCAAGACGACTGCTACAAGCTGCGGTATGACGTTCCGGGCC
TAGGCAAAGATGATGTGAAGATCACCATTCATGATGGGGTTCTGACAATA
AAGGGTGAGCACAAGGAAGAGGAAGAGGAAAGCTCTGACGACGAACACTG
GTCAGCAAGGGAGCTATGGTTACTACAACACAAGCCTCGCGCTGCCTGAT
GATGCGAAGGCTGACGAGAT
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