CN185774

Overview
NameCN185774
Unique NameCN185774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11024 contig Csv1_Contig11024:721..1426. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185774 vs. ExPASy Swiss-Prot
Match: Y1341_ORYSJ (B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 48/148 (32.43%), Postives = 93/148 (62.84%), Query Frame = -1 
Query:  266 CCSQNAFLHENLAQGINFKLIVGTISEIVNIADALRAC-KFTTSRDEFAMWDKTLKAFELLGMSVGFXXXXXXXXXXXAFESEGAEDTRRYIEAKAQQSQTQDEIRNIEARLVELKGAWQRFDAEISSLKSSAESYELKFREVANAPW 706
            CC+Q +FLH +L + ++  L+VG I E +NIA+ +RAC   T+S+++F +W KTL++F+LLGM+V F             +     +  +Y E K ++S+  ++++ +E+ ++ +K   ++ DAE+  ++SS  ++++  R++A APW
Sbjct:  348 CCAQKSFLHRHLLRQLSLTLVVGVIMETINIAEGIRACGAGTSSQEDFLIWKKTLQSFDLLGMNVAFLLKRVDDILGLPEQPRDPSECSKYNELKLERSRAGEKVKALESMMLTVKDVLKKIDAEMEEMESSVRNHDIALRKIATAPW 495
The following BLAST results are available for this feature:
BLAST of CN185774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1341_ORYSJ1.509e-2332.43B3 domain-containing protein Os01g0234100 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185774 ID=CN185774; Name=CN185774; organism=Citrus sinensis; type=EST; length=706bp
CAAAGTCTATCTTACATTCGAATCCTTAAAACACACTAAACAGCTGGTAA
TGGCTGATGTTTTTGCAAAGATACTAAGCGATGCTACAACTACCTAGCAA
TCCTGTGTCAGATCTACCACATGAAAACAGGTTCACCTCGTTGCTATTTC
AAGTTACAGAGGAGTCATTAATGATGATACACAAGAAAAAAAAGGATTGA
CCAACGGTAATTTAAAAAAAAAAATTTAACAAAAAATTATTAGGCACATA
ACAACTAGAACGTCACCATGGAGCGTTTGCCACTTCTCGGAACTTGAGCT
CATAGCTCTCAGCTGAGGACTTCAGACTTGAGATTTCTGCATCAAACCTC
TGCCAAGCACCTTTCAATTCCACGAGCCTTGCTTCAATATTTCTTATCTC
ATCTTGCGTCTGAGATTGTTGAGCTTTAGCTTCTATATACCTCCTTGTGT
CCTCGGCACCTTCTGATTCAAAAGCTAATCTCTGAAGCCGGCGTAGGCGA
GCACGTAAGAAGCCGACACTCATGCCCAAAAGCTCAAAGGCTTTCAGAGT
CTTGTCCCACATAGCAAATTCATCACGGGATGTAGTAAACTTGCAAGCTC
TCAAGGCATCTGCAATGTTGACGATTTCAGAAATAGTTCCAACAATCAAC
TTGAAATTGATACCCTGTGCAAGATTCTCATGAAGGAATGCATTCTGACT
ACAGCA
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