CN185762

Overview
NameCN185762
Unique NameCN185762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185762_ssr516 microsatellite CN185762_ssr516:516..529. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2551 contig Csv1_Contig2551:512..1213. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185762 vs. ExPASy Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 53/152 (34.87%), Postives = 74/152 (48.68%), Query Frame = 3 
Query:   66 MMHMTFYWGRQVTLLFDFWRTDSWPSYALTLLACFLFSAFYQYLEDRRVRLNRIAVGQKPAIADVETPLLQRKVVGKFSAARIAG---TALFGINSGVGYLLMLAIMSFNGGVFLAVVVGLMIGYLV-----FRSESDD--VTLVVDNPCAC 491
            MMHMTF+WG+   +LF  W   S   YAL L+  F  +   ++L      L R + G                     SA R AG   TA++ +  G+ YL+MLA+MSFN GVFL  + G  +G+++     FR+ SDD     V  + CAC
Sbjct:   41 MMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSS--LLRGSTGD--------------------SANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGCAC 170
The following BLAST results are available for this feature:
BLAST of CN185762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPT1_ARATH1.066e-1334.87Copper transporter 1 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185762 ID=CN185762; Name=CN185762; organism=Citrus sinensis; type=EST; length=702bp
ATGACTTGTTCTCTCCTCCAAATTTTTTTTTTTCTTTTCCTGAAATCCAA
AACCGAGCTGCGAAGATGATGCACATGACCTTCTACTGGGGCCGGCAAGT
GACCCTCTTGTTCGACTTTTGGCGTACCGATTCATGGCCGAGTTACGCGC
TGACCCTTCTCGCCTGCTTCCTCTTCTCCGCCTTTTACCAGTACCTGGAG
GACAGGCGCGTCCGCTTGAACCGGATCGCCGTCGGACAGAAGCCCGCCAT
CGCCGACGTCGAGACCCCGCTGCTGCAGAGAAAAGTCGTCGGGAAATTCT
CGGCGGCGAGGATCGCCGGGACGGCCCTGTTTGGGATCAATTCTGGGGTG
GGGTACTTGCTGATGCTGGCGATCATGTCGTTTAATGGGGGCGTGTTCTT
GGCAGTCGTTGTGGGGCTTATGATTGGTTACTTGGTCTTTAGAAGTGAAA
GTGATGATGTCACCCTTGTTGTTGATAATCCTTGTGCTTGCGCTTAGTGA
TTACGAAGGCTCTCCCTCTCTCTCTCTCTTTTTTTTGTTTGGGGTTTCTG
GGTAATTTATTTCTCTGTGTAATACTGTCGCTTTGTGCCATGTATCTTTT
TATCTTTGTGCTATAGGTTGTAAAACTGATTTGTAAATGATATTACAAAA
GGGAAAGGAGACATAAAAATCTTGTTTTTCTGATGATGGTTTTAAATTAA
AA
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