CN185756

Overview
NameCN185756
Unique NameCN185756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3060 contig Csv1_Contig3060:140..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.324e-98
Identity = 172/183 (93.99%), Postives = 182/183 (99.45%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKG VPIGIGKNSHI+RAIIDKNARIGD+VKI+NSD+VQEAARET+GYFIKSGIVT+IKDALIPSGT+I
Sbjct:  330 VQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKNSHIRRAIIDKNARIGDDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 512
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 5.031e-98
Identity = 171/183 (93.44%), Postives = 181/183 (98.91%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR  LAAKGS+PIGIG++SHIKRAIIDKNARIGDNVKI+N+D+VQEAARETDGYFIKSGIVT+IKDALIPSGT+I
Sbjct:  338 VQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRTLLAAKGSIPIGIGRDSHIKRAIIDKNARIGDNVKIINTDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 520
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 8.582e-98
Identity = 173/183 (94.54%), Postives = 179/183 (97.81%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDADR+ LAAKGSVPIGIGKN HIKRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG II
Sbjct:  339 VQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.912e-97
Identity = 170/183 (92.90%), Postives = 182/183 (99.45%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKI HSVVGLRSCISEGAIIEDTLLMGADYYET+AD+RFLAAKGSVPIGIGKNSHIKRAI+DKNARIG+NVKI+NSD+VQEAARET+GYFIKSGIVTIIKDALIPSGT++
Sbjct:  326 VQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIFHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGKNSHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVL 508
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 351.288 bits (900), Expect = 3.606e-96
Identity = 169/183 (92.35%), Postives = 179/183 (97.81%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYET  ++  L+AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI+NSD+VQEAARETDGYFIKSGIVT+IKDALIP+GT+I
Sbjct:  338 VQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPTGTVI 520
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.337e-95
Identity = 167/183 (91.26%), Postives = 178/183 (97.27%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  291 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 473
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.337e-95
Identity = 169/183 (92.35%), Postives = 177/183 (96.72%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYETDA+R+ LAAKGSVPIGIGKN   KRAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDALIPSG +I
Sbjct:  339 VQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAERKLLAAKGSVPIGIGKNCLYKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIVI 521
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.337e-95
Identity = 167/183 (91.26%), Postives = 178/183 (97.27%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYET+AD++ LA KG +PIGIGKNSHIKRAIIDKNARIGDNV I+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  331 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKNSHIKRAIIDKNARIGDNVMIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 513
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 344.354 bits (882), Expect = 4.408e-94
Identity = 163/183 (89.07%), Postives = 177/183 (96.72%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRSAPIYTQPR+LPPSK+LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED+LLMGADYYET+AD++ L  KG +PIGIGKN HI+RAIIDKNARIGDNVKI+N D+VQEAARETDGYFIKSGIVT+IKDAL+PSGT+I
Sbjct:  332 VQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514
[Close]
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.123e-89
Identity = 161/183 (87.98%), Postives = 171/183 (93.44%), Query Frame = -3 
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAYLYDGYWEDIGTIEAFYNANLGITKKP+PDFSFYDRS+PIYTQPRYLPPSKMLDAD+TDSVIGEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR+FLAAKGSVPIGIG            NARIGD+VKI+NSD+VQEAARETDGYFIKSGIVTIIKDA+IPSGT+I
Sbjct:  319 VQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRKFLAAKGSVPIGIG------------NARIGDDVKIINSDNVQEAARETDGYFIKSGIVTIIKDAMIPSGTVI 489
The following BLAST results are available for this feature:
BLAST of CN185756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
GLGS2_VICFA1.324e-9893.99Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BRANA5.031e-9893.44Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU8.582e-9894.54Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA1.912e-9792.90Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH3.606e-9692.35Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT2.337e-9591.26Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC2.337e-9592.35Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU2.337e-9591.26Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ4.408e-9489.07Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BETVU1.123e-8987.98Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185756 ID=CN185756; Name=CN185756; organism=Citrus sinensis; type=EST; length=795bp
GAGGTTTTTTTTTAGAATGAAAGATTTTATTTCTGCATAACTAGACCTTT
ACAGCATGTCCCTTTTTCCAGGTCCTATATTCCTCTCATAATTACATTAC
ACTGCCCGGAAATATACAGCTTATAGCAAAAAGATGGCCAAAGGTAAAGT
GGAAGCAGACTTGAGATTACGACATTCTCGAGCATAGAGGGGAAGGTACC
CGCAGCAGCGCAGCTTGGGATGAAACTGAGAAGACGACAGTTTAGATTAT
GGTTCCACTGGGAATCAAGGCATCCTTGATTATTGTGACAATCCCGCTCT
TGATGAAGTATCCATCTGTTTCCCTTGCTGCTTCTTGCACACTGTCACTG
TTGACGATCTTCACATTATCCCCAATTCGAGCATTTTTGTCAATTATTGC
TCTCTTGATGTGAGAATTCTTGCCAATACCAATTGGAACACTACCCTTTG
CAGCCAAAAACCTCCTGTCCGCGTCTGTCTCATAATAATCTGCTCCCATA
AGTAAAGTATCTTCGATAATTGCACCTTCTGATATGCAAGATCGAAGCCC
AACAACAGAATGGTGAATTTTGCAATTCTTAATCACACAGCCTTCACCAA
TTACACTATCAGTGACATCAGCATCAAGCATCTTAGAAGGAGGTAGATAT
CTAGGCTGTGTATAAATTGGAGCAGAACGGTCATAGAAGCTGAAATCCGG
AATTGGCTTTTTGGTGATCCCCAGATTCGCATTGTAGAAAGCCTCAATTG
TTCCAATGTCTTCCCAGTAGCCATCATATAAATATGCTTGCACTC
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