CN185735

Overview
NameCN185735
Unique NameCN185735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2502 contig Csv1_Contig2502:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RK17_TOBAC (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum GN=RPL17 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.797e-64
Identity = 121/161 (75.16%), Postives = 135/161 (83.85%), Query Frame = -2
Query:  172 RTQQAPHLFSSYMGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 654
            + + +  L  S++GLA  +PLLSL   D TSFEH    +DNG R+ AMRHGR+VPKL+RPPDQRR L  GLTTQLLKHGRIKT +ARA AVRKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV +RYGERNGGYTRIIRTLPR GDN P+AYIE
Sbjct:   43 KPKSSSRLLHSFVGLAPLHPLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 203          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RK17_ARATH (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.390e-63
Identity = 120/151 (79.47%), Postives = 131/151 (86.75%), Query Frame = -2
Query:  172 SYMGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 624
            S+ GL+  NPLLS+G  D  SFE+G   VD G RI AMRHGRRVPKL+RPPDQR+ L  GLTTQLLKHGRIKT RARASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV +RYGERNGGYTRIIRTLPR GDN P+AYIE
Sbjct:   59 SFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 209          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNP2 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplQ PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 71/114 (62.28%), Postives = 93/114 (81.58%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRHG RVP+L RP DQR+ L   LTTQL++HG++KT +ARA AVR  VD+MITLAKDGSL  RR+ALG++Y+K +VHALFA+ ++RYG+R GGY+R++RT+ R GDN  +A IE
Sbjct:    1 MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSLAARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_ACAM1 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) GN=rplQ PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.296e-37
Identity = 75/114 (65.79%), Postives = 91/114 (79.82%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RV KL +P DQR+ L   L+TQL++HGR+ T +ARA AVR  V+KMITLAKDGSL  RRQALG+IY+KQ+VHALF +V +RYG+RNGGYTRIIRT+ R GDN  +A IE
Sbjct:    1 MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSLASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROMT (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL2A) GN=rplQ PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 70/114 (61.40%), Postives = 91/114 (79.82%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH RR+P+LS P DQR+ L  GLTTQL++ GR+ T +ARA A+R   ++MITLAKDGSL  RR+A+G++Y+KQ+VHALF + QERYG+R GGYTRI+RT PR GDN  +A +E
Sbjct:    1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROM1 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL1A) GN=rplQ PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.214e-36
Identity = 70/114 (61.40%), Postives = 91/114 (79.82%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH RR+P+LS P DQR+ L  GLTTQL++ GR+ T +ARA A+R   ++MITLAKDGSL  RR+A+G++Y+KQ+VHALF + QERYG+R GGYTRI+RT PR GDN  +A +E
Sbjct:    1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_THEEB (50S ribosomal protein L17 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.532e-36
Identity = 73/114 (64.04%), Postives = 91/114 (79.82%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH RRVP+L RP DQR+ L   LTT+L++HGRI T +ARA AVR   ++MITLAKDGSL  RR+ALG++Y+KQ+VH+LFA+  ERYG+R GGYTRIIR++ R GDN  LA IE
Sbjct:    1 MRHQRRVPQLGRPADQRKALLRALTTELIRHGRITTTKARAKAVRAEAERMITLAKDGSLAARRRALGYLYDKQLVHSLFAQAPERYGDRQGGYTRIIRSVRRRGDNAELAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNR3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain RCC307) GN=rplQ PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVP+L RP DQR+ +  GLTTQL++ GR+ T +ARA A+R   ++MI+LAKDGSL  RR+ALG+IY+KQ+VHALF +  ERYG+RNGGYTRIIRT+PR GDN  +A IE
Sbjct:    1 MRHQCRVPQLGRPADQRKAMLRGLTTQLIREGRVTTTKARAKALRDETERMISLAKDGSLAARRRALGYIYDKQLVHALFDKASERYGDRNGGYTRIIRTVPRRGDNAEMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_TRIEI (50S ribosomal protein L17 OS=Trichodesmium erythraeum (strain IMS101) GN=rplQ PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 71/114 (62.28%), Postives = 90/114 (78.95%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVPKL +P DQRR L   L TQL++HG+IKT + RA AV+  V++MITLAKDGSL  RR+ALG++Y+K++VH+LF E QERYG RNGGYTR++RT+ R GDN  +A IE
Sbjct:    1 MRHSCRVPKLGKPTDQRRALLRSLATQLIRHGQIKTTKPRAKAVQSEVERMITLAKDGSLAARRRALGYLYDKKLVHSLFNEAQERYGSRNGGYTRVLRTIRRRGDNAEMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROMM (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplQ PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 71/114 (62.28%), Postives = 91/114 (79.82%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVPKL RP DQR+ +  GLTTQL++ GR+ T +ARA A+R   ++MITLAK+GSL  RR+A+G+IY+KQ+VHALF + Q+RYG+R GGYTRIIRT+PR GDN  +A IE
Sbjct:    1 MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIE 114          
The following BLAST results are available for this feature:
BLAST of CN185735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK17_TOBAC1.797e-6475.1650S ribosomal protein L17, chloroplastic OS=Nicoti... [more]
RK17_ARATH3.390e-6379.4750S ribosomal protein L17, chloroplastic OS=Arabid... [more]
RL17_SYNP29.296e-3762.2850S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
RL17_ACAM19.296e-3765.7950S ribosomal protein L17 OS=Acaryochloris marina ... [more]
RL17_PROMT1.214e-3661.4050S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_PROM11.214e-3661.4050S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_THEEB3.532e-3664.0450S ribosomal protein L17 OS=Thermosynechococcus e... [more]
RL17_SYNR34.614e-3663.1650S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
RL17_TRIEI7.870e-3662.2850S ribosomal protein L17 OS=Trichodesmium erythra... [more]
RL17_PROMM7.870e-3662.2850S ribosomal protein L17 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185735 ID=CN185735; Name=CN185735; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAACATAAGCTGGCCCCCTTGCACATCCCTATTA
CAACTGAAATACATCACCTTCATCGGCATGGCACCCTCTCAATCACAAAA
ATGTCAAATTGTTTATACATTCATACAAAATAAGCCACAAATTAAAGAAA
CAAACAAAGTACCTAAACAAGTTCAATGTAGGCCAGGGGGGGATTATCAC
CTCCCCTAGGAAGTGTTCTGATAATTCTAGTATATCCCCCATTCCGTTCA
CCATACCTTTCTTGAACCTCTGCGAACAAGGCATGTACAATCTGCTTCTC
ATAAATGAACCCAAGCGCTTGCCTCCTCTTATGAAGGGAACCGTCTTTAG
CGAGCGTAATCATCTTGTCAACATACTTCCTCACAGCACTGGCCCTAGCT
CTAGGGGTTTTGATCCTACCGTGCTTAAGCAATTGAGTGGTGAGGCCACC
GAAAAGCCCCCGCCGTTGGTCAGGAGGCCTGCTGAGCTTCGGAACTCGCC
TGCCGTGCCTCATTGCAGAAATTCGACACCCATTATCCACGAAAGCCAGA
CCATGTTCAAAACTTGTCAGGTCGGAAAAGCCGAGGGAGAGTAATGGGTT
GTTAGAAGCCAGACCCATGTAAGATGAGAAGAGGTGTGGTGCTTGTTGGG
TGCGGGTGAAACTGAAACTTGGGCGGCAGTGAGACGATGATGAGAATCGG
ATTGAAAAAAAAGAAATG
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