CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2470 contig Csv1_Contig2470:25..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 5.186e-53
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            L P+    VLESKYG+PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALV+ELK+MSKEVEDSELADVAAVS
Sbjct:   80 LGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVEDSELADVAAVS 199          

HSP 2 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 3
Query:  216 RRARTPKIYA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVCSREQVRCPK 389
            R+ R  K+ A AK+LHFNKDG A+KKLQNGVNKLADLVGVTLGPKGRNV    +   PK
Sbjct:   39 RKNRNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPK 97          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            L P+    VLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITRGIEKT+KALV+ELK+MSKEVEDSELADVAAVS
Sbjct:   86 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVAELKKMSKEVEDSELADVAAVS 205          

HSP 2 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 60/112 (53.57%), Postives = 69/112 (61.61%), Query Frame = 3
Query:   60 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSV--ALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVCSREQVRCPK 389
            MASTFTA SSI SM+APN   TD                    FGRRQ+V   LRR+    + AAK+LHFNKDG  ++KLQ GVNKLADLVGVTLGPKGRNV    +   P+
Sbjct:    1 MASTFTATSSIGSMVAPNAHKTDKKLMNKLSSSS---------FGRRQNVFPKLRRSSPAVVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPR 103          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            L P+    VLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITRGIEKT+KALV+ELK+MSKEVEDSELADVAAVS
Sbjct:   86 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVEDSELADVAAVS 205          

HSP 2 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 59/112 (52.68%), Postives = 69/112 (61.61%), Query Frame = 3
Query:   60 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPK--IYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVCSREQVRCPK 389
            MASTFTA SSI SM+APNG  +D                    FGRRQSV  R  R+    + AAK+LHFNKDG  +++LQ GVNKLADLVGVTLGPKGRNV    +   P+
Sbjct:    1 MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSS---------FGRRQSVCPRPRRSSSAIVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPR 103          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 97/104 (93.27%), Postives = 102/104 (98.08%), Query Frame = 1
Query:  385 PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV+AAGANPV ITRGIEKT+KALV ELK+MSKEVEDSELADVAAVS
Sbjct:    1 PQIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVIAAGANPVQITRGIEKTAKALVLELKKMSKEVEDSELADVAAVS 104          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.407e-37
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 1
Query:  343 PRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            P+    VLE  YG P I NDGVT+AK +EL+D  EN+GAKLV +AA KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIEK +KA V EL ++S +VE   ++A+VAAVS
Sbjct:   32 PKGRNVVLEQSYGNPDITNDGVTIAKSIELKDRYENMGAKLVAEAAQKTNDIAGDGTTTATVLTQAIVREGMKNVTAGANPVGIRRGIEKATKAAVDELHKISHKVESKDQIANVAAVS 150          

HSP 2 Score: 41.5874 bits (96), Expect = 1.407e-37
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AKD+ F+++  A + L  GV+KLAD V  T+GPKGRNV
Sbjct:    2 AKDIKFSEN--ARRSLLKGVDKLADTVKTTIGPKGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.051e-37
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 1
Query:  343 PRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            P+    VLE  YG P I NDGVT+AK +EL+D  EN+GAKLV +AA KTND+AGDGTTT+ VL Q +  EG+K V AGANPV I RGIEK +KA V EL ++S +VE  E +A+VAAVS
Sbjct:   32 PKGRNVVLEQSYGNPDITNDGVTIAKSIELKDHYENMGAKLVAEAAQKTNDIAGDGTTTATVLTQAIAREGMKNVTAGANPVGIRRGIEKATKAAVDELHKISHKVESKEQIANVAAVS 150          

HSP 2 Score: 40.4318 bits (93), Expect = 4.051e-37
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AKD+ F ++  A + L  GV+KLAD V  T+GPKGRNV
Sbjct:    2 AKDIKFAEN--ARRSLLKGVDKLADTVKTTIGPKGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LACHE (60 kDa chaperonin OS=Lactobacillus helveticus GN=groL PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.052e-37
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 1
Query:  343 PRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            P+    VLE  YG P I NDGVT+AK +EL+D  EN+GAKLV +AA KTND+AGDGTTT+ VL Q +  EG+K V AGANPV I RGIEK +KA V EL ++S +VE   ++A+VAAVS
Sbjct:   32 PKGRNVVLEQSYGNPDITNDGVTIAKSIELKDRYENMGAKLVAEAAQKTNDIAGDGTTTATVLTQAIAREGMKNVTAGANPVGIRRGIEKATKAAVDELHKISHKVESKDQIANVAAVS 150          

HSP 2 Score: 41.5874 bits (96), Expect = 4.052e-37
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AKD+ F+++  A + L  GV+KLAD V  T+GPKGRNV
Sbjct:    2 AKDIKFSEN--ARRSLLKGVDKLADTVKTTIGPKGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.523e-36
Identity = 73/124 (58.87%), Postives = 100/124 (80.65%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            +++ L P+    +LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ AAKT D+AGDGTTT+ VL Q LI EG+K VAAG+NPV + RGI+KT++ALV+E+ +++K VE S +A VA VS
Sbjct:   26 VKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVAAKTKDVAGDGTTTATVLVQALIKEGLKNVAAGSNPVSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVS 149          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_STRAG (60 kDa chaperonin OS=Streptococcus agalactiae GN=groL PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 9.671e-36
Identity = 69/121 (57.02%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VLE  +G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VL Q ++ EG+K V AGANP+ I RGIE    A V ELK++++ V   E +A VAAVS
Sbjct:   30 LGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLPQAIVREGLKNVTAGANPIGIRRGIETAVSAAVEELKEIAQPVSGKEAIAQVAAVS 150          

HSP 2 Score: 39.6614 bits (91), Expect = 9.671e-36
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AKD+ F+ D  A   +  GV+ LAD V VTLGPKGRNV
Sbjct:    2 AKDIKFSAD--ARSAMVRGVDILADTVFVTLGPKGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LACZE (60 kDa chaperonin OS=Lactobacillus zeae GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.641e-35
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            L P+    VL+  YG+P+I NDGVT+AK ++LED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV I  GIEK +KA V EL ++S +V    E+A VA+VS
Sbjct:   30 LGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHKVNGKKEIAQVASVS 150          

HSP 2 Score: 36.965 bits (84), Expect = 1.641e-35
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK++ F++D  A   +  GV++LA+ V  TLGPKGRNV
Sbjct:    2 AKEIKFSEDARAA--MLRGVDQLANTVKTTLGPKGRNV 37          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_PEA5.186e-5392.50RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA1.668e-5189.17RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_ARATH1.668e-5189.17RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE6.140e-4693.27RuBisCO large subunit-binding protein subunit beta... [more]
CH60_LACH41.407e-3759.6660 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH60_LACAC4.051e-3760.5060 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH60_LACHE4.052e-3759.6660 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]
CH602_ANAVT7.523e-3658.8760 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH60_STRAG9.671e-3657.0260 kDa chaperonin OS=Streptococcus agalactiae GN=g... [more]
CH60_LACZE1.641e-3557.8560 kDa chaperonin OS=Lactobacillus zeae GN=groL PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
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