CN185724

Overview
NameCN185724
Unique NameCN185724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1966 contig Csv1_Contig1966:100..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.004e-99
Identity = 177/202 (87.62%), Postives = 186/202 (92.08%), Query Frame = 2
Query:   68 MAFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            M F KIKV +PIV MDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTVESA+AT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVIQG GKLKLVFVPEG DEKT  EVYNFTG GGVALS+YNTDESVR+ AEASMN A
Sbjct:    1 MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMA 202          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.831e-99
Identity = 176/202 (87.13%), Postives = 186/202 (92.08%), Query Frame = 2
Query:   68 MAFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            MAFQKI V +PIV MDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTVESA+AT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKT  EVYNFTG GGVALS+YNTDESVR+ AEASMN A
Sbjct:    1 MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMA 202          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.299e-98
Identity = 174/202 (86.14%), Postives = 188/202 (93.07%), Query Frame = 2
Query:   68 MAFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            M FQKIKVA+PIV MDGDEMTR+ WK IKDKLIFPF+ELDIKYFDLGLP RD T+DKVTVESA+ATLKYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIPGWTKPICIGRHAFGDQYRATD+VI+GPGKLKLVFVPEG+ E T LEVYNFTGEGGVAL++YNTDES+R+ AEASM  A
Sbjct:   22 MGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVA 223          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 3.200e-97
Identity = 171/201 (85.07%), Postives = 187/201 (93.03%), Query Frame = 2
Query:   71 AFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            AFQKIKVA+PIV MDGDEMTRV WKSIKDKLI PFLELDIKY+DLGLP RD TDDKVT+ESA+ATLKYNVAIKCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+PGWTK ICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG+ E+T  EV+NFTGEGGV+L++YNTDES+R+ AEASM TA
Sbjct:    3 AFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLAMYNTDESIRSFAEASMATA 203          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.496e-73
Identity = 131/201 (65.17%), Postives = 158/201 (78.61%), Query Frame = 2
Query:   71 AFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            A Q+IKVA P+V MDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+        EVYNF   GGV + +YNTDES+   A +    A
Sbjct:    9 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYA 208          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.224e-72
Identity = 131/205 (63.90%), Postives = 159/205 (77.56%), Query Frame = 2
Query:   59 KKKMAFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            ++  A ++IKVA P+V MDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+        EVYNF   GGV + +YNTDES+   A +    A
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYA 239          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.224e-72
Identity = 131/205 (63.90%), Postives = 159/205 (77.56%), Query Frame = 2
Query:   59 KKKMAFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            ++  A ++IKVA P+V MDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+        EVYNF   GGV + +YNTDES+   A +    A
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYA 239          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.089e-72
Identity = 130/205 (63.41%), Postives = 160/205 (78.05%), Query Frame = 2
Query:   59 KKKMAFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            ++  A ++IKVA P+V MDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+        EVYNF   GGV + +YNTDES+   A +    A
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYA 239          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 271.552 bits (693), Expect = 2.728e-72
Identity = 129/200 (64.50%), Postives = 158/200 (79.00%), Query Frame = 2
Query:   59 KKKMAFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEA 658
            ++  A ++IKV  P+V MDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+        EVYNF   GGV + +YNTDES+   A +
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPA-GGVGMGMYNTDESISGFAHS 234          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 4.653e-72
Identity = 129/200 (64.50%), Postives = 158/200 (79.00%), Query Frame = 2
Query:   59 KKKMAFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEA 658
            ++  A ++IKV  P+V MDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+        EVYNF   GGV + +YNTDES+   A +
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFPA-GGVGMGMYNTDESISGFAHS 234          
The following BLAST results are available for this feature:
BLAST of CN185724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC2.004e-9987.62Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU5.831e-9987.13Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA1.299e-9886.14Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_SOYBN3.200e-9785.07Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_PIG5.496e-7365.17Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_MACFA1.224e-7263.90Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_HUMAN1.224e-7263.90Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN2.089e-7263.41Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE2.728e-7264.50Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT4.653e-7264.50Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185724 ID=CN185724; Name=CN185724; organism=Citrus sinensis; type=EST; length=674bp
CGGCACTCCGCTCTGCACTATTATCTCTCTCTAGTTGTGAATCAACCGAA
ACTGATTAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCCATCCC
ATCGTCTAAATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGAT
TAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCG
ACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAA
AGTGCACAAGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTAT
TACTCCAGATGAAGCTCGTGTCAAGGAATTTGTCTTGAAACAGATGTGGA
AGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGA
GAACCAATCATTTGCAAAAATGTCCCTCGGCTTATTCCAGGCTGGACAAA
GCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATCGAGCAACTG
ATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTTGTACCAGAG
GGAAAAGATGAGAAGACATAGTTAGAGGTTTACAACTTTACGGGTGAGGG
TGGAGTTGCATTGTCCGTGTATAACACTGATGAGTCCGTCCGAGCTTCTG
CTGAGGCTTCTATGAACACTGCCT
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