CN185723

Overview
NameCN185723
Unique NameCN185723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185723_ssr14 microsatellite CN185723_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
CN185723_ssr147 microsatellite CN185723_ssr147:147..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9890 contig Csv1_Contig9890:25..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185723 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.065e-82
Identity = 140/189 (74.07%), Postives = 165/189 (87.30%), Query Frame = 2
Query:  128 EAPPSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPS-NNPLEPVIHAFNNWSTKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISS 691
            E   S  ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +QPYV YSP++ P+ NNPLEPVI  F+ WS KAET+ARN+WHNLKTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T+PNE LKKTFACYLSTTTGPVAGT+YLS ARVAFCSDRPL FTAPSGQE+WSYY+V++PLAN+++
Sbjct:   28 EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVAT 216          
BLAST of CN185723 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.105e-31
Identity = 76/202 (37.62%), Postives = 109/202 (53.96%), Query Frame = 2
Query:  116 STLTEAPPSEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPI---DKPSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANISS 691
            ST  +AP       K   H        S  PD + A+S +A +       PY+  SP    D    + +E V      W       + K E++A N W +L+T PS ++AA G++  + K   EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WSYYKV+IPL  + +
Sbjct:   53 STPVKAPSRTSSGSKKSVHWSPELVSGSQEPDQKAASSSSAGSN------PYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY-KNGDQTEWSYYKVVIPLHQLKA 247          
BLAST of CN185723 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29
Identity = 72/170 (42.35%), Postives = 96/170 (56.47%), Query Frame = 2
Query:  185 PAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPIDKPSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIP 673
            P  P   P    A +  AE+       PYV  SP  +   N ++ V      W       + KAE +A N W +LKTGPSV++AA  ++    K + EGG+E +FKQ F   P+EKL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYYKV++P
Sbjct:   45 PPPPQPIPTGAAATTMPAESN------PYVSPSPAPR---NTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY-KEGEQTLWSYYKVVLP 204          
BLAST of CN185723 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  248 QQIYHQPYVEYSPI----DKPSNNPLE-PVIHAFNNWSTKAETIARN---------IWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANIS 688
            QQ+   P V+ SP     D  S N L+ P    F+  + K +++ R          +    K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G+    +YKV IPL  I+
Sbjct:    8 QQLITFPAVKTSPAGYLPDPASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKIN 168          
BLAST of CN185723 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 59/169 (34.91%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  143 EEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQPYVEYSPI---DKPSNNPLEPVIHAFNNW-------STKAETIARNIW-HNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPL 616
            + E   W   ++     P     ++KA S ++  R      PYV  +P    D      +E V      W       + KAE++A N W H L+       AA G++  + K + EGG+E +F+Q F T P E+L+ +FACYLST+ GPV G LY+STA++A+CSD  L
Sbjct:   24 DRENLHWNPELVSESPAP-----DEKALSSSSAARSN----PYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL 176          
BLAST of CN185723 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:  389 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANIS 688
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G  +  +YKV IPL  I+
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKIN 168          
BLAST of CN185723 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  257 YHQPYVEY-SPIDKPSNNPLEPVIHAFNNW-------STKAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCF-TAPSGQEAWSYYKVMIPLANISS 691
            Y  PYV   SP         + V+   N         + KAE +   +  +LK  PS+S+AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+AFCSD  +   ++  G    +YYKV++    ISS
Sbjct:   27 YDNPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISS 180          
BLAST of CN185723 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  389 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANIS 688
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G +AG L++S+ ++AFCS+R +  T+P G     +YKV IPL  I+
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKIN 160          
BLAST of CN185723 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  350 KAETIARNIWHNLKTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVAGTLYLSTARVAFCSDRPLCFTAPSGQEAWSYYKVMIPLANI 685
            K +     +    K  P ++E    K++L A+ +  GG E +FK++F     EKL K + CYLSTT GP+AG L++S+ ++AFCS+R +   +P G     +YKV IPL  I
Sbjct:   55 KTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKI 166          
The following BLAST results are available for this feature:
BLAST of CN185723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH3.065e-8274.07GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH1.105e-3137.62GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH3.931e-2942.35GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML8_ARATH3.688e-1934.78Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML3_ARATH3.688e-1934.91Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML6_ARATH1.401e-1843.00GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH1.401e-1835.71GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML7_ARATH3.122e-1843.00GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH1.186e-1738.39GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185723 ID=CN185723; Name=CN185723; organism=Citrus sinensis; type=EST; length=693bp
AGGATCCATCAGAATTTATTTATTTTTGTTCTCATAGCAATAGCATCAAC
CTTCCAGTCAATCGACAACCAGCATCACCATGACAAGCACACCAGATCCA
GAAGAAAAATTGTCAAGCACTCTGACAGAAGCTCCACCTTCAGAAGAAGA
AAGAAAGAAATGGGGTACCCATATCATGGGAGCGCCAGCAGTGCCTAGTG
CTCACCCAGACAATCAAAAGGCAGCCTCATGGAACGCCGAAAACCGCCAG
CAAATCTATCATCAGCCTTATGTTGAGTACTCTCCTATCGACAAGCCAAG
CAACAACCCTTTGGAGCCTGTAATTCACGCGTTCAATAATTGGAGCACCA
AAGCTGAGACCATTGCCCGCAACATCTGGCATAACCTGAAAACCGGTCCC
TCTGTGTCGGAAGCTGCATGGGGGAAGGTGAATTTGACAGCGAAAGCAAT
AACAGAGGGCGGATTTGAGTCTCTCTTCAAGCAGATTTTTGCAACTGATC
CGAATGAGAAGCTAAAGAAGACCTTTGCGTGTTATCTTTCTACAACAACT
GGTCCTGTTGCTGGAACACTCTATTTATCAACAGCCCGTGTGGCTTTCTG
CAGTGATCGTCCCTTGTGTTTTACTGCTCCATCTGGGCAGGAAGCTTGGA
GCTACTACAAGGTTATGATACCTTTGGCGAATATAAGCTCAGT
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