CN185722

Overview
NameCN185722
Unique NameCN185722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185722 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.529e-66
Identity = 113/149 (75.84%), Postives = 137/149 (91.95%), Query Frame = -1
Query:  288 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVGGTLYLSTARVAFCSDRPLCFNAPSGQEAWSYYKVMIPLANISSVNPVTVKENPSDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR 734
            KTGPS+SE AWGKVNLTAKAIT+GGFESLF+QIF T+PNE LKKTFACYLSTTTGPV GT+YLS ARVAFCSDRPL F APSGQE+WSYY+V++PLAN+++VNPV VKE P +KY+++ TV+GH+FWFMGFVN+EKAT+HLL S+S+++
Sbjct:  116 KTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQ 264          
BLAST of CN185722 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.056e-39
Identity = 71/145 (48.97%), Postives = 104/145 (71.72%), Query Frame = -1
Query:  300 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVGGTLYLSTARVAFCSDRPLCFNAPSGQEAWSYYKVMIPLANISSVNPVTVKENPSDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSL 734
            +T PS ++AA G++  + K   EGG+E +F+Q F TDP E+L  +FACYLST+ GPV G LY+S+A++A+CSD PL +     Q  WSYYKV+IPL  + +VNP     NP++KY+++++V+ HEFWFMGF+N++ A   L +SL
Sbjct:  148 RTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYK-NGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291          
BLAST of CN185722 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.492e-37
Identity = 72/148 (48.65%), Postives = 102/148 (68.92%), Query Frame = -1
Query:  291 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVGGTLYLSTARVAFCSDRPLCFNAPSGQEAWSYYKVMIPLANISSVNPVTVKENPSDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEY 734
            KTGPSV++AA  ++    K + EGG+E +FKQ F   P+EKL KT+ACYLST+ GPV G +YLST ++AF SD PL +     Q  WSYYKV++P   + +VNP T + N SDKY+++++++ HEFWFMGFV +E A   L  ++  +
Sbjct:  111 KTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYK-EGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQSH 257          
BLAST of CN185722 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.364e-32
Identity = 63/146 (43.15%), Postives = 96/146 (65.75%), Query Frame = -1
Query:  297 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVGGTLYLSTARVAFCSDRPLCFNAPSGQEAWSYYKVMIPLANISSVNPVTVKENPSDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLS 734
            K GP ++E    K++L A+ +  GG E ++K++F     EKL K + CYLSTT GP+ G L++S+ ++AFCS+R +   +P G+    +YKV IPL  I+ VN       PS KY+++VTV+G +FWFMGF++++KA N L  +LS
Sbjct:   69 KLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALS 214          
BLAST of CN185722 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.558e-31
Identity = 63/146 (43.15%), Postives = 96/146 (65.75%), Query Frame = -1
Query:  297 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVGGTLYLSTARVAFCSDRPLCFNAPSGQEAWSYYKVMIPLANISSVNPVTVKENPSDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLS 734
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT GP+ G L++S+ ++AFCS+R +   +P G  +  +YKV IPL  I+ VN     + PS KY++IVT++  +FWFMGFV+++KA N L  +L+
Sbjct:   69 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALN 214          
BLAST of CN185722 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.647e-31
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = -1
Query:  294 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVGGTLYLSTARVAFCSDRPLCFNAPSGQEAWSYYKVMIPLANISSVNPVTVKENPSDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSE 734
            K GP ++E    K++L AK +  GG E ++K++F     EKL K + CYLSTT G + G L++S+ ++AFCS+R +   +P G     +YKV IPL  I+ VN     + PS +Y+++VTV+ ++FWFMGFV+++KA N L  +L+E
Sbjct:   61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALNE 207          
BLAST of CN185722 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.647e-31
Identity = 63/146 (43.15%), Postives = 95/146 (65.07%), Query Frame = -1
Query:  297 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVGGTLYLSTARVAFCSDRPLCFNAPSGQEAWSYYKVMIPLANISSVNPVTVKENPSDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLS 734
            K  P ++E    K++L A+ +  GG E +FK++F     EKL K + CYLSTT GP+ G L++S+ ++AFCS+R +  ++P G     +YKV IPL  I  VN     + PS KY+++VTV+G +FWFMGF++++KA N L  +LS
Sbjct:   68 KIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALS 213          
BLAST of CN185722 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = -1
Query:  300 AAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVGGTLYLSTARVAFCSDRPLCFNAPSGQEAWSYYKVMIPLANISSVNPVTVKENPSDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSL 710
            AA G++  + K + EGG+E +F+Q F T P E+L+ +FACYLST+ GPV G LY+STA++A+CSD  L               V+IPL  + SVNP     NP++KY+++++V+ HEFWFMGF+N+E A   L ++L
Sbjct:  109 AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTL 230          
BLAST of CN185722 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.639e-26
Identity = 63/150 (42.00%), Postives = 93/150 (62.00%), Query Frame = -1
Query:  288 KTGPSVSEAAWGKVNLTAKAITEGGFESLFKQIFATDPNEKLKKTFACYLSTTTGPVGGTLYLSTARVAFCSDRPLCF-NAPSGQEAWSYYKVMIPLANISSVNPVTVKENPSDKYMKIVTVEGHEFWFMGFVNFEKATNHLLNSLSEYR 734
            K  PS+S+AA  +++   K I EGG E +F++ F     EKL  +F CY+STT+GPV G +Y+S  R+AFCSD  +   ++  G    +YYKV++    ISS++  T    PS++Y+ +VT +G EFWFMGFV++  A N L  +L   R
Sbjct:   79 KFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKALLNSR 228          
The following BLAST results are available for this feature:
BLAST of CN185722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML5_ARATH1.529e-6675.84GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEM_ARATH6.056e-3948.97GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH1.492e-3748.65GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML8_ARATH9.364e-3243.15Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH3.558e-3143.15GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH4.647e-3142.18GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH4.647e-3143.15GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
GEML3_ARATH5.138e-3045.26Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML2_ARATH2.639e-2642.00GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185722 ID=CN185722; Name=CN185722; organism=Citrus sinensis; type=EST; length=734bp
TTTTTTTTTTTTTTTTTCTTTTTTTTCTCCGCCCTTTGCGTAAGCCGATT
ACAAGTGAATTGAATTTAAAAATTTGATCTTCTACACTTGAATATTGAAA
CACACAAGCGACCTGTGTTCAGATCTTTACACACAAAATACCAAATCAAT
TACTGCTTTACAACCAAACCAACCTATAAATTCTCAAACGGAAAGAAACA
ACCAAAAGCAGAGCATACGAAAATTTTGACTCCAACAACCATTTTACACA
GCTACTGGTCGCCCACTCGCCCTGCACTTCCAGTTGCTCTGTATTCTGAC
AAACTGTTCAACAAGTGGTTCGTTGCTTTCTCGAAATTGACAAAGCCCAT
GAACCAAAATTCATGTCCCTCCACAGTTACAATCTTCATGTACTTGTCTG
AGGGATTTTCTTTTACTGTCACTGGATTGACTGAGCTTATATTCGCCAAA
GGTATCATAACCTTGTAGTAGCTCCAAGCTTCCTGCCCAGATGGAGCATT
AAAACACAAGGGACGATCACTGCAAAAAGCCACACGGGCTGTTGATAAAT
AGAGTGTTCCACCAACAGGACCAGTTGTTGTAGAAAGATAACACGCAAAG
GTCTTCTTTAGCTTCTCATTCGGATCAGTTGCAAAAATCTGCTTGAAGAG
AGACTCAAATCCCCCCTCTGTTATTGCTTTCGCTGTCAAATTCACCTTCC
CCCATGCAGCTTCCGACACAGAGGGACCGGTTTT
back to top