CN185721

Overview
NameCN185721
Unique NameCN185721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:279..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.990e-31
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSL+PS FGGRRTNVF PFSLDVWDPF GFL+  LTNAP  A++ + FTNA++DW++TP AHVFKAD+P L KEEVKV+VE+G IL
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNIL 84          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.576e-29
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFL--SSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIPSIFGGRR+NVF PFS D+WDPF GF   SSAL NA S+AR+ + FTNAR+DWK+TP AHVFKADLP L KEEVKV+VE+  +L
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVL 87          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.670e-29
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLS-SALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIPSIFGGRRTNVF PFSLDV+DPF GFL+ S L NAP  A + + FTNA++DW++TP AHVFKADLP L KEEVKV+VE+G IL
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNIL 85          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.701e-26
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MS+IPS FGGRR+NVF PFSLDVWDPF  F     ++A    +ET+ F N  IDWK+TP AHVFKADLP L KEEVKV++EEG++L
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVL 85          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.312e-26
Identity = 54/86 (62.79%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIPS FGGRR+NVF PFSLDVWDPF  F  +    + S  RE S F + R+DWK+TP AHVFKADLP + KEEVKV++E+ R+L
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVL 86          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.092e-25
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGF-----LSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIP+ FGGRR NVF PFSLDVWDPF  F     LSSA  + P  +RE S F + R+DWK+TP AHVFKAD+P L KEEVKV +E+ ++L
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSA--SFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVL 89          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.979e-25
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGF-LSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MS+IPS FG RR+NV +PFSLD+WDPF  + L ++   +    +ET+ F N  IDWK+TP AHVFKADLP L KEEVKV+VEEG++L
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVL 87          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.979e-25
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIPS F GRR+NVF PFSLDVWDP   F  S  + + S  RE   F + R+DWK+TP AHVFKADLP L KEEVKV+VE+ R+L
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVL 86          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.115e-25
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLSSALTNAPSS-ARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIPSIFGGRR+NVF PFSLDVWDPF  F      + P+S + E S F N R+DWK+TP AHVF+AD+P L KEEVKV +E+ R+L
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDF------HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVL 81          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.190e-24
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MS+IPS F  +R+N+F PFSLD WDPF G +S+        ARET+   NARIDWK+TP AHV KADLP + KEEVKV+VE+GR+L
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVL 80          
The following BLAST results are available for this feature:
BLAST of CN185721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
HSP17_ARATH4.990e-3170.9317.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ARATH3.576e-2971.5918.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH4.670e-2972.4117.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_DAUCA3.701e-2663.9517.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_MEDSA6.312e-2662.7918.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP16_SOYBN4.092e-2561.5418.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_DAUCA6.979e-2559.7718.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_PEA6.979e-2562.7918.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP13_SOYBN9.115e-2563.2217.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_HELAN1.190e-2460.4717.6 kDa class I heat shock protein OS=Helianthus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185721 ID=CN185721; Name=CN185721; organism=Citrus sinensis; type=EST; length=303bp
ATGTTGAAGTTGTTGAGCATTTAATTAGCGCCCCAGTTTGCCATAATGTC
ACTCATTCCAAGCATCTTCGGTGGACGAAGAACCAACGTGTTCCATCCAT
TTTCATTAGATGTATGGGATCCTTTCCACGGGTTCTTGTCCTCTGCCCTT
ACCAACGCGCCGTCTTCTGCTAGGGAAACATCCCAATTCACCAATGCAAG
AATTGACTGGAAAGACACTCCTCACGCTCATGTATTCAAGGCTGATCTTC
CACGGCTGACGAAAGAAGAAGTGAAAGTTGACGTTGAAGAGGGCAGGATT
CTG
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