CN185715

Overview
NameCN185715
Unique NameCN185715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.607e-55
Identity = 104/131 (79.39%), Postives = 119/131 (90.84%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            KYN+ +R G+GFTLEELKAAGIPKKLAPTIGI+VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK+T +MKSFKA+DK+R+ER N+RH GAR
Sbjct:   63 KYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.751e-54
Identity = 104/131 (79.39%), Postives = 116/131 (88.55%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            KYN+ +RAG+GFTLEELK AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI   K  ++LVK+T D+K+FKAYDK+R+ER N RH GAR
Sbjct:   63 KYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.566e-53
Identity = 103/131 (78.63%), Postives = 115/131 (87.79%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            KYN+ +R G+GFTLEELKAAGIPKKLAPTIGIS+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  ++LVK+T +MKS  AYDK+R+ER N+RH GAR
Sbjct:   63 KYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.749e-53
Identity = 102/131 (77.86%), Postives = 115/131 (87.79%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            KYN+ +R G+GFTLEELK+AGIPKKLAPTIGI+VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   +LVK+T +MKS KA+DK+R+ER N+RH GAR
Sbjct:   63 KYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.457e-48
Identity = 96/130 (73.85%), Postives = 109/130 (83.85%), Query Frame = 2
Query:    5 YNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            YN+ +RAG+GFTLEELKAAGIPKKLAPTIGISVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT++LVK+T DMK F AYDK+R+E  N+RH G R
Sbjct:   64 YNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.743e-42
Identity = 87/132 (65.91%), Postives = 103/132 (78.03%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARL 397
            KYN+ +R+GRGF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH GAR+
Sbjct:   59 KYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARM 190          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.742e-37
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            KYN   R GRGFTLEELK AGIP K APT+GI+VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP ++LVK+T DMK    Y KLRIER N R  G R
Sbjct:   64 KYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.151e-35
Identity = 78/131 (59.54%), Postives = 95/131 (72.52%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            +Y+  +RAGRGFTLEELKAAGI KK+A TIGISVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI           +++D K+FKA+  LR+ RAN R FG R
Sbjct:   65 RYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.911e-32
Identity = 72/131 (54.96%), Postives = 91/131 (69.47%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            +YN  +RAGRGFTLEELKAAGI K++A TIGI+VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI +         +T++ K F A+  LR+ RAN R FG R
Sbjct:   65 RYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIR 195          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.261e-32
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            +Y+  +RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:   65 RYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195          
The following BLAST results are available for this feature:
BLAST of CN185715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH1.607e-5579.3960S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL133_ARATH6.751e-5479.3960S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_BRANA2.566e-5378.6360S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA9.749e-5377.8660S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL132_ARATH1.457e-4873.85Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC7.743e-4265.9160S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW5.742e-3759.5460S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE3.151e-3559.5460S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_ICTPU1.911e-3254.9660S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_RAT3.261e-3254.9660S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185715 ID=CN185715; Name=CN185715; organism=Citrus sinensis; type=EST; length=637bp
GAAATATAACCTGTAATTAAGGGCTGGCAGAGGCTTTACTCTTGAGGAAC
TCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCAACAATTGGCATTTCA
GTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCAATCTAATGT
TCAGAGGCTGAAGACTTACAAGGCCAAGTTGGTTGTTTTCCCAAGACGTG
CTCGCAAGTTTAAGGCTGGTGATTCTGCTCCTGAGGAATTGGCAACAGCA
ACTCAAGTACAAGGACCTTACATGCCCATTACTCTTGAGAAGCCTACTGT
CGACCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCAAGGCTTATGACA
AGCTCCGGATTGAGCGTGCGAACGAGCGCCATTTTGGTGCCAGGTTGAAG
AAGGCTGCAGAGGCTGAAAAGGAAGAGAAGAAGTAAACAAACTTGTTTAA
GCAGCACATTGAGTGTGGCACTACATTTTACATTTCAATTTTGAATCTTT
TTGTTATAGTGATTTCAATCTCTTAGCTTTAGGTTTGAAGAAGTTATTTC
ATTTTGAATGTGGGAAGATTTCTTGGTTATATTATTTGCAATGGACCTAC
CCTATGGTTGTCCTGTTTTTTAAAAAAAAAAAAAAAA
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