CN185714

Overview
NameCN185714
Unique NameCN185714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5456 contig Csv1_Contig5456:246..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.394e-57
Identity = 106/131 (80.92%), Postives = 120/131 (91.60%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            KYNMK+R G+GFTLEELKAAGIPKKLAPTIGI+VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK+T +MKSFKA+DK+R+ER N+RH GAR
Sbjct:   63 KYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.686e-55
Identity = 106/131 (80.92%), Postives = 117/131 (89.31%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            KYNMK+RAG+GFTLEELK AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI   K  ++LVK+T D+K+FKAYDK+R+ER N RH GAR
Sbjct:   63 KYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.021e-54
Identity = 105/131 (80.15%), Postives = 116/131 (88.55%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            KYNMK+R G+GFTLEELKAAGIPKKLAPTIGIS+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  ++LVK+T +MKS  AYDK+R+ER N+RH GAR
Sbjct:   63 KYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.879e-54
Identity = 104/131 (79.39%), Postives = 116/131 (88.55%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            KYNMK+R G+GFTLEELK+AGIPKKLAPTIGI+VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   +LVK+T +MKS KA+DK+R+ER N+RH GAR
Sbjct:   63 KYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.796e-50
Identity = 98/130 (75.38%), Postives = 110/130 (84.62%), Query Frame = -1
Query:  239 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 628
            YNMK+RAG+GFTLEELKAAGIPKKLAPTIGISVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT++LVK+T DMK F AYDK+R+E  N+RH G R
Sbjct:   64 YNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.081e-43
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = -1
Query:  236 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARL 631
            KYNMK+R+GRGF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH GAR+
Sbjct:   59 KYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARM 190          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.090e-38
Identity = 79/131 (60.31%), Postives = 97/131 (74.05%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            KYN K R GRGFTLEELK AGIP K APT+GI+VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP ++LVK+T DMK    Y KLRIER N R  G R
Sbjct:   64 KYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.793e-36
Identity = 79/131 (60.31%), Postives = 96/131 (73.28%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +Y+ K+RAGRGFTLEELKAAGI KK+A TIGISVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI           +++D K+FKA+  LR+ RAN R FG R
Sbjct:   65 RYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.694e-33
Identity = 73/131 (55.73%), Postives = 92/131 (70.23%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +YN K+RAGRGFTLEELKAAGI K++A TIGI+VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI +         +T++ K F A+  LR+ RAN R FG R
Sbjct:   65 RYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIR 195          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.890e-33
Identity = 73/131 (55.73%), Postives = 95/131 (72.52%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:   65 RYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195          
The following BLAST results are available for this feature:
BLAST of CN185714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH6.394e-5780.9260S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL133_ARATH2.686e-5580.9260S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_BRANA1.021e-5480.1560S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA3.879e-5479.3960S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL132_ARATH5.796e-5075.38Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC3.081e-4367.4260S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW5.090e-3860.3160S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE2.793e-3660.3160S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_ICTPU1.694e-3355.7360S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_RAT2.890e-3355.7360S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185714 ID=CN185714; Name=CN185714; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTAAAAACAAGACAACCATAGGGTAGGCCCCTTTTAAATA
CTATAACCAAGAAATCTTCCCACATTCAAAATGAAATAACTTCTTCAAAC
CTAAAGCTAAGAGATTGAAATCACTATAACAAAAAGATTCAAAATTGAAA
TGTAAAATGTAGTGCCACACTCAATGTGCTGCTTAAACAAGTTTGTTTAC
TTCTTCTCTTCCTTTTCAGCCTCTGCAGCCTTCTTCAACCTGGCACCAAA
ATGGCGCTCGTTCGCACGCTCAATCCGGAGCTTGTCATAAGCCTTGAAGG
ACTTCATATCTTGAGTAACCTTAACAAGGTCGACAGTAGGCTTCTCAAGA
GTAATGGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTC
AGGAGCAGAATCACCAGCCTTAAACTTGCGAGCACGTCTTGGGAAAACAA
CCAACTTGGCCTTGTAAGTCTTCAGCCTCTGAACATTAGATTGAAGACCC
TCAAGAGAACGGTTCTTGCGTCGATGATCGACTGAAATGCCAATTGTTGG
AGCCAGTTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGC
CTCTGCCAGCCCTTAATTTCATGTTATATTT
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