CN185699

Overview
NameCN185699
Unique NameCN185699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9249 contig Csv1_Contig9249:509..1245. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.481e-64
Identity = 127/151 (84.11%), Postives = 134/151 (88.74%), Query Frame = -2
Query:  284 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 736
            DIIDPALLRPGRLDQLIYIPLPDEESR QIFK+CLRKSPV+KDVDLRALAKYTQGFSGADITEICQR+CKYAIRENIEKDIE+ER+R+E+P            EIKA    ESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA
Sbjct:  631 DIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAESP-EAMEEDEEEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 780          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.303e-62
Identity = 123/152 (80.92%), Postives = 131/152 (86.18%), Query Frame = -2
Query:  281 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAA 736
            DIID ALLRPGRLDQLIYIPLPDE+SRL IFKA LRKSP++KDVD+ ALAKYTQGFSGADITEICQRACKYAIRENIEKDIE+E+RRSENP            EIKA    ESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF ++A
Sbjct:  631 DIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFENSA 782          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.007e-62
Identity = 123/152 (80.92%), Postives = 131/152 (86.18%), Query Frame = -2
Query:  281 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAA 736
            DIIDPALLRPGRLDQLIYIPLPDE+SR QIFKACLRKSP+SKD+DLRALAK+TQGFSGAD+TEICQRACKYAIRENIEKDIERE+RR ENP            EIK     ESMKYARRSVSDADIRKYQAFAQTLQQSRGFG+EFRF D +
Sbjct:  631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPLSKDIDLRALAKHTQGFSGADVTEICQRACKYAIRENIEKDIEREKRRQENP-DSMDEDVDEVPEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADTS 781          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.949e-61
Identity = 122/152 (80.26%), Postives = 132/152 (86.84%), Query Frame = -2
Query:  284 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENP-XXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 736
            DIIDPALLRPGRLDQLIYIPLPDE+SR QIFKACLRKSP++K+VDLRALA++TQGFSGADITEICQRACKYAIRENIEKDIERER+  ENP             EIKA    ESMK+ARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP++
Sbjct:  631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPES 782          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.546e-61
Identity = 124/153 (81.05%), Postives = 129/153 (84.31%), Query Frame = -2
Query:  281 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENP-XXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAA 736
            DIID ALLRPGRLDQLIYIPLPDE+SRL IFKACLRKSPV+KDVD+ ALAKYTQGFSGADITEICQRACKYAIRENIEKDIE ERRRS+NP             EI+A    ESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF   A
Sbjct:  630 DIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFDSTA 782          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.683e-50
Identity = 104/151 (68.87%), Postives = 117/151 (77.48%), Query Frame = -2
Query:  284 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA 736
            DIIDPA+LRPGRLDQLIYIPLPDE+SR+ I KA LRKSP+SKDVDL  LAK T GFSGAD+TEICQRACK AIRE+IE +I RER R  NP            EI+     E+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP +
Sbjct:  627 DIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAMEVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSS 776          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 104/149 (69.80%), Postives = 116/149 (77.85%), Query Frame = -2
Query:  290 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 736
            DIIDPA+LRPGRLDQLIYIPLPDE+SR+ I KA LRKSPV+KDVDL  LAK T GFSGAD+TEICQRACK AIRE+IE +I RER R  NP            EI+     E+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct:  627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 104/149 (69.80%), Postives = 116/149 (77.85%), Query Frame = -2
Query:  290 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 736
            DIIDPA+LRPGRLDQLIYIPLPDE+SR+ I KA LRKSPV+KDVDL  LAK T GFSGAD+TEICQRACK AIRE+IE +I RER R  NP            EI+     E+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct:  627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 104/149 (69.80%), Postives = 116/149 (77.85%), Query Frame = -2
Query:  290 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 736
            DIIDPA+LRPGRLDQLIYIPLPDE+SR+ I KA LRKSPV+KDVDL  LAK T GFSGAD+TEICQRACK AIRE+IE +I RER R  NP            EI+     E+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct:  627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 104/149 (69.80%), Postives = 116/149 (77.85%), Query Frame = -2
Query:  290 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 736
            DIIDPA+LRPGRLDQLIYIPLPDE+SR+ I KA LRKSPV+KDVDL  LAK T GFSGAD+TEICQRACK AIRE+IE +I RER R  NP            EI+     E+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP
Sbjct:  627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774          
The following BLAST results are available for this feature:
BLAST of CN185699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
CD48D_ARATH5.481e-6484.11Cell division control protein 48 homolog D OS=Arab... [more]
CD48A_ARATH2.303e-6280.92Cell division control protein 48 homolog A OS=Arab... [more]
CDC48_CAPAN3.007e-6280.92Cell division cycle protein 48 homolog OS=Capsicum... [more]
CDC48_SOYBN1.949e-6180.26Cell division cycle protein 48 homolog OS=Glycine ... [more]
CD48E_ARATH2.546e-6181.05Cell division control protein 48 homolog E OS=Arab... [more]
TERA_DANRE7.683e-5068.87Transitional endoplasmic reticulum ATPase OS=Danio... [more]
TERA_RAT1.311e-4969.80Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG1.311e-4969.80Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE1.311e-4969.80Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN1.311e-4969.80Transitional endoplasmic reticulum ATPase OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185699 ID=CN185699; Name=CN185699; organism=Citrus sinensis; type=EST; length=737bp
ATCTTGCAGAGTTTCATTTCATCCATTATAATCAAAATAGACCATTGCGT
TCCAGCAGCCTAAACTCATTTAACCTTTTCGGCTTTATGGCAGAAACATT
GAAGCTTTTGACAAATCATATGGCGAATCGTCAAATACATATGTAAACCA
ACATCAGCATAAATTAGACAGCAAACTGATAGACTTTAAACGGGGGGAGG
ATCTAACTGTAAAGATCATCGTCATCTGCGCCACCTGCAGAAGACGCAAA
AGGATCTGATCCGCCATCAGCACCAGGGGGAGCAGCATCAGGAAACCTAA
ATTCACTTCCAAACCCTCTTGACTGCTGCAATGTTTGAGCAAATGCTTGG
TATTTGCGTATGTCAGCATCACTGACACTTCTACGAGCATACTTCATTGA
TTCCGCGGAGGGCACAGCTTTAATCTCAGCCACTTCATCCTCTACATCCT
CCTCCATTGCCTCTGGGTTCTCACTTCTCCTCCTCTCCCTCTCAATATCT
TTCTCGATATTCTCTCGGATGGCATATTTGCAAGCCCGCTGGCATATTTC
AGTAATATCTGCACCACTAAAGCCTTGGGTGTACTTAGCAAGAGCTCTGA
GGTCAACATCTTTGGACACCGGTGATTTCCTCAAGCAAGCCTTGAAAATT
TGAAGGCGAGATTCCTCATCAGGGAGAGGGATATAAATCAACTGGTCAAG
ACGGCCTGGACGGAGAAGGGCAGGATCTATGATATCT
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