CN185677

Overview
NameCN185677
Unique NameCN185677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10250 contig Csv1_Contig10250:60..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.756e-53
Identity = 93/137 (67.88%), Postives = 117/137 (85.40%), Query Frame = -1
Query:  189 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 599
            YDAIIVDSSDP+GPAQEL EKPFF+++AKALRPGGV+C  AES+ LH H+IED+++ CR+ FKGSV+YAW +VPTYPSG+IGF++CSTEGP VDF +PINPI+  +G  K  + L+FYNSEIHSAAF LP+F K+ +
Sbjct:  175 YDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPINPIDANDGRSKTMKPLKFYNSEIHSAAFCLPSFAKKVI 311          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.486e-52
Identity = 91/141 (64.54%), Postives = 117/141 (82.98%), Query Frame = -1
Query:  177 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVLG 599
            YDA+IVDSSDP+GPAQEL EKPFF+++A+ALRPGGV+C  AES+ LH H+IED+++ CR+ FKGSV+YAW +VPTYPSG+IGF++CSTEGP VDF NPINP++  +   K +  L+FYNSEIHSA+F LP+F KR +   G
Sbjct:  167 YDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPINPVDADDSHTKTRGPLKFYNSEIHSASFCLPSFAKRVIESKG 307          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 7.376e-52
Identity = 91/137 (66.42%), Postives = 115/137 (83.94%), Query Frame = -1
Query:  189 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 599
            YDA+IVDSSDP+GPAQEL EKPFF+++A+AL PGGV+C  AES+ LH H+IED++S CR+ FKGSV+YAW +VPTYPSG+IGF++CSTEGP VDF NPINPI+  +   K +  L+FYNSEIHSA+F LP+F KR +
Sbjct:  167 YDAVIVDSSDPIGPAQELFEKPFFESVARALCPGGVVCTQAESIWLHMHIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPINPIDADDSHTKTRGPLKFYNSEIHSASFCLPSFAKRVI 303          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPD1_ORYSJ (Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.244e-51
Identity = 91/137 (66.42%), Postives = 114/137 (83.21%), Query Frame = -1
Query:  189 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 599
            YDA+IVDSSDP+GPAQEL EKPFF ++A+ALRPGGV+C  AES+ LH H+IED+++ CR+ FKGSV+YAW +VPTYPSG+IGF++CSTEGP VDF +PI  IE  E + K K  L+FYNSEIHSA+F LP+F KR +
Sbjct:  182 YDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQVFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPTVDFQHPIFNIEDNEFSTKSKGPLKFYNSEIHSASFCLPSFAKRVI 318          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 8.155e-51
Identity = 89/138 (64.49%), Postives = 116/138 (84.06%), Query Frame = -1
Query:  186 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 599
            YDA+IVDSSDP+GPAQEL EKPFF+++A+ALRPGGV+C  AES+ LH H+IED++  CR+ FKGSV+YAW +VPTYPSG+IGF++CSTEGP VDF +P+NPI++   + +  R L+FYN EIHSAAF LP+F KR ++
Sbjct:  194 YDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDE-NDSQQAARPLKFYNREIHSAAFCLPSFAKRAIA 330          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.391e-50
Identity = 90/137 (65.69%), Postives = 115/137 (83.94%), Query Frame = -1
Query:  189 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 599
            YDA+IVDSSDP+GPAQEL EKPFF ++A+ALRPGGV+C  AES+ LH  +IED++S CR  FKGSV+YAW +VPTYPSG+IGF++CSTEGP VDF +P+NPI++ +   K  R L+FYNSEIH+AAF LP+F KR++
Sbjct:  202 YDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIEDIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPIDQ-KDCQKSVRPLKFYNSEIHTAAFCLPSFAKRKI 337          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.391e-50
Identity = 90/137 (65.69%), Postives = 114/137 (83.21%), Query Frame = -1
Query:  189 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 599
            YDA+IVDSSDP+GPA+EL EKPFF ++A+ALRPGGV+C  AES+ LH  +IED++S CRE FKGSV+YAW SVPTYPSG+IGF++CSTEGP VDF +P+NPI+  E + K    L+FYN+EIHSAAF LP+F K+ +
Sbjct:  195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFKHPLNPID--ESSSKSNGPLKFYNAEIHSAAFCLPSFAKKVI 329          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.099e-50
Identity = 92/141 (65.25%), Postives = 114/141 (80.85%), Query Frame = -1
Query:  177 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVLG 599
            YDA+IVDSSDP+GPAQEL EKPFF++IAKALRPGGV+   AES+ LH H+IE++++ CR+ FKGSV+YAW +VPTYPSG+IGF++CSTEGP VDF NPINPI+  E   K    L+FYNSEIH A+F LP+F KR +   G
Sbjct:  202 YDAVIVDSSDPIGPAQELFEKPFFESIAKALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPIDD-ESPAKSIEPLKFYNSEIHQASFCLPSFAKRVIETKG 341          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.904e-50
Identity = 92/141 (65.25%), Postives = 114/141 (80.85%), Query Frame = -1
Query:  177 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVLG 599
            YDA+IVDSSDP+GPAQEL EKPFF+TIA+ALRPGGV+   AES+ LH H+IE++++ CRE FKGSV+YAW +VPTYPSG+IGF++CSTEGP VDF NPINPI+  E   +    L+FYNSEIH A+F LP+F KR +   G
Sbjct:  177 YDAVIVDSSDPIGPAQELFEKPFFETIARALRPGGVVSTQAESIWLHMHIIEEIVANCREIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPIDD-ESHGQTIGPLKFYNSEIHQASFCLPSFAKRVIETKG 316          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.178e-49
Identity = 91/141 (64.54%), Postives = 114/141 (80.85%), Query Frame = -1
Query:  177 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVLG 599
            YDA+IVDSSDP+GPAQEL EKPFF++IA+ALRPGGV+   AES+ LH H+IE++++ CR+ FKGSV+YAW +VPTYPSG+IGF++CSTEGP VDF NPINPI+  E   K    L+FYNSEIH A+F LP+F KR +   G
Sbjct:  175 YDAVIVDSSDPIGPAQELFEKPFFESIARALRPGGVVSTQAESIWLHMHIIEEIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPIDD-ESGPKTIAPLKFYNSEIHQASFCLPSFAKRVIESKG 314          
The following BLAST results are available for this feature:
BLAST of CN185677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
SPDE_COFAR1.756e-5367.88Spermidine synthase OS=Coffea arabica PE=2 SV=1[more]
SPD1_DATST1.486e-5264.54Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPD2_HYONI7.376e-5266.42Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=... [more]
SPD1_ORYSJ6.244e-5166.42Spermidine synthase 1 OS=Oryza sativa subsp. japon... [more]
SPD1_PEA8.155e-5164.49Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPD2_PEA1.391e-5065.69Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ... [more]
SPD1_ARATH1.391e-5065.69Spermidine synthase 1 OS=Arabidopsis thaliana GN=S... [more]
SPDE_SOLLC3.099e-5065.25Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD2_DATST6.904e-5065.25Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPD1_HYONI1.178e-4964.54Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185677 ID=CN185677; Name=CN185677; organism=Citrus sinensis; type=EST; length=602bp
TTTTTTTTTTTTTTTTTAAGGTCAAGGTCAAGGCGTAACCCCTGGTCTAC
ATATATCATAATCACCCTATAAACTATAACACGCGGAAGCAGTAAATCTC
GCTCGTCAAGAAATCATGTGACGATTGGTATGAATCATTAGGAGACGCAT
ATTCCTTGACTTGGAGTTGGAGAATCACCAAGTACGCTCACCTCCCTCTT
CAAAAATGCAGGCAATGCAAAGGCAGCTGAGTGAATCTCCGAGTTATAGA
ACCTTAGTTCTCTTTTATGCTTGTCAGCTCCCTCCAACTTCTCAATAGGA
TTAATGGGGTTCACAAAATCAACATGAGGTCCCTCTGTTGAGCATATCAG
AAACCCAATGATACCACTTGGGTATGTTGGGACACTTGCCCAAGCATAAT
GTACAGAACCCTTAAATGTTTCACGACAAATAGAAATCATGTCCTCAATA
AGGTGAGTATGAAGCCCCATACTTTCTGCCATGTTACAGAGGACACCTCC
AGGCCTTAATGCTTTAGCAATTGTGTCAAAAAATGGCTTCTCTACAAGCT
CTTGAGCAGGACCTACAGGGTCTGATGAATCAACAATAATTGCATCATAT
TT
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