CN185674

Overview
NameCN185674
Unique NameCN185674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2496 contig Csv1_Contig2496:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_ARATH (Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 8.450e-93
Identity = 157/200 (78.50%), Postives = 175/200 (87.50%), Query Frame = 1
Query:   85 EDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            ++  +L Y+SGFGN FSSEAI GALP  QNSPL+CP+GLYAEQISGTSFTSPRKLNQRSWLYR+KPS THEPFKPRVPAH KLVSEFD SNS T PTQLRW+P DIPDS  DF+DGL+TICGAGSSFLRHG+AIHMY AN  M + AFCNADGDFL+VPQ GRLWI TECG+L V+PGEIAV+PQGFRF++ LPDG SRG
Sbjct:    6 KELEELKYQSGFGNHFSSEAIAGALPLDQNSPLLCPYGLYAEQISGTSFTSPRKLNQRSWLYRVKPSVTHEPFKPRVPAHKKLVSEFDASNSRTNPTQLRWRPEDIPDSEIDFVDGLFTICGAGSSFLRHGFAIHMYVANTGMKDSAFCNADGDFLLVPQTGRLWIETECGRLLVTPGEIAVIPQGFRFSIDLPDGKSRG 205          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_ORYSJ (Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 8.470e-85
Identity = 147/197 (74.62%), Postives = 164/197 (83.25%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYT--TPTQLRWKPVDIPDS--PTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SG GNS SSEA+ G LPRGQNSPLVCP GLYAEQ+SGT FT+PR  N R+WLYRIKPS THEPF PR PAH +L+ +FD++ + T  TPTQLRW+P D+P    P DFIDGLYT+CGAGSSFLRHGYAIHMY ANKSMD CAFCNADGDFL+VPQ+G+L I TECGKL V PGEI V+PQGFRFAV LPDGPSRG
Sbjct:   24 YLSGLGNSLSSEAVAGTLPRGQNSPLVCPLGLYAEQLSGTPFTAPRARNLRTWLYRIKPSVTHEPFHPRRPAHPRLIGDFDRTTTDTVATPTQLRWRPADVPPHHPPLDFIDGLYTVCGAGSSFLRHGYAIHMYAANKSMDGCAFCNADGDFLIVPQQGKLLITTECGKLLVPPGEIVVIPQGFRFAVDLPDGPSRG 220          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURCJ (Homogentisate 1,2-dioxygenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hmgA PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.900e-60
Identity = 114/195 (58.46%), Postives = 147/195 (75.38%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF N F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVSEF  S     T P QLRW P+ +P  PTDF+DGL T+ G GS+   +G AIH+Y AN+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGAQ-RLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFAVALPDGDARG 206          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURCH (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain HI2424) GN=hmgA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.481e-60
Identity = 114/195 (58.46%), Postives = 147/195 (75.38%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF N F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVSEF  S     T P QLRW P+ +P  PTDF+DGL T+ G GS+   +G AIH+Y AN+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGAQ-RLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFAVALPDGNARG 206          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURCA (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain AU 1054) GN=hmgA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.481e-60
Identity = 114/195 (58.46%), Postives = 147/195 (75.38%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF N F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVSEF  S     T P QLRW P+ +P  PTDF+DGL T+ G GS+   +G AIH+Y AN+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGAQ-RLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFAVALPDGNARG 206          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURS3 (Homogentisate 1,2-dioxygenase OS=Burkholderia sp. (strain 383) GN=hmgA PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.233e-60
Identity = 112/199 (56.28%), Postives = 149/199 (74.87%), Query Frame = 1
Query:   94 SDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            ++  Y+SGF N F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P      +LVSEF  S     T P QLRW P+ +P  PTDF+DGL T+ G GS+   +G AIH+Y AN+SM +  F +ADG+ L+VPQ+GRL+IATE G++EV P EIAV+P+G RF+V+LPDG +RG
Sbjct:    9 ANAGYQSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGPQ-RLVSEFGDSADVPPTPPDQLRWDPLPMPVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRVEVEPFEIAVIPRGVRFSVTLPDGDARG 206          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURVG (Homogentisate 1,2-dioxygenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hmgA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.220e-60
Identity = 111/195 (56.92%), Postives = 147/195 (75.38%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGFGN F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+R+WLYRI+P+A H PF+P      +LV+EF  S     T P QLRW P+ +P  PTDF++GL T+ G GS+   +G AIH+Y AN+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   13 YLSGFGNEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRAWLYRIRPAAVHRPFEP-FTGRQRLVAEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVEGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPAEIAVIPRGVRFAVALPDGDARG 206          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURA4 (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain MC40-6) GN=hmgA PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.608e-59
Identity = 112/195 (57.44%), Postives = 147/195 (75.38%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF N F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P V    +LVSEF  S     T P QLRW P+ +P  PTDF++GL T+ G GS+   +G AIH+Y AN+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RF+V+LPDG +RG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEP-VTGPQRLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVEGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFSVALPDGDARG 206          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURCC (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain MC0-3) GN=hmgA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.744e-59
Identity = 113/195 (57.95%), Postives = 146/195 (74.87%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF N F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVSEF  S     T P QLRW P+ +   PTDF+DGL T+ G GS+   +G AIH+Y AN+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPYAGAQ-RLVSEFGDSADVPPTPPNQLRWDPLPMLVEPTDFVDGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFAVALPDGDARG 206          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURM1 (Homogentisate 1,2-dioxygenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=hmgA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.680e-59
Identity = 111/195 (56.92%), Postives = 145/195 (74.36%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF N F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  +LVS+F  S     T P QLRW P+ +P  PTDF++GL T+ G GS+    G AIH+Y AN+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RF V+LPDG +RG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPFAGAQ-RLVSDFADSADVPPTPPNQLRWNPLPMPSEPTDFVEGLVTMAGNGSAAAMSGCAIHLYAANRSMRDRFFYSADGELLIVPQQGRLFIATELGRLDVEPFEIAVIPRGVRFTVALPDGDARG 206          
The following BLAST results are available for this feature:
BLAST of CN185674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_ARATH8.450e-9378.50Homogentisate 1,2-dioxygenase OS=Arabidopsis thali... [more]
HGD_ORYSJ8.470e-8574.62Homogentisate 1,2-dioxygenase OS=Oryza sativa subs... [more]
HGD_BURCJ1.900e-6058.46Homogentisate 1,2-dioxygenase OS=Burkholderia cepa... [more]
HGD_BURCH2.481e-6058.46Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURCA2.481e-6058.46Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURS34.233e-6056.28Homogentisate 1,2-dioxygenase OS=Burkholderia sp. ... [more]
HGD_BURVG7.220e-6056.92Homogentisate 1,2-dioxygenase OS=Burkholderia viet... [more]
HGD_BURA41.608e-5957.44Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]
HGD_BURCC2.744e-5957.95Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURM14.680e-5956.92Homogentisate 1,2-dioxygenase OS=Burkholderia mult... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185674 ID=CN185674; Name=CN185674; organism=Citrus sinensis; type=EST; length=685bp
ATGGATTGTTAGTGAGCTGCTGAGACACAAATGGAGAACAAGAGTCAACA
TCAATCATCATCATTAATCAGAAAAACGGACGGCGAAGATTTCTCTGATC
TGAATTACGAGTCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGAC
GGTGCGTTGCCACGTGGACAGAACAGCCCCCTCGTTTGTCCGTTCGGTCT
CTACGCCGAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCA
ATCAACGCAGTTGGTTATACAGAATAAAACCTTCTGCAACACATGAACCG
TTTAAGCCTCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAA
GTCTAACAGTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATA
TCCCTGATTCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGG
GCTGGCAGCTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTGC
CAACAAATCAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTT
TGGTAGTTCCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAA
CTGGAAGTCTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTT
TGCTGTAAGTTTACCAGATGGTCCATCACGTGGTT
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