CN185673

Overview
NameCN185673
Unique NameCN185673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_ARATH (Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2)

HSP 1 Score: 318.546 bits (815), Expect = 2.694e-86
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL KFCP+NTVL+DHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI G YEAKADGFLPGGASLHSCMTPHGPDT TYEATIAR +   P K+T TMAFMFES LIPR+C WALESPF+DHDYYQCWIGL+SHFS
Sbjct:  279 VPYKYDLKKFCPYNTVLLDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKADGFLPGGASLHSCMTPHGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHDYYQCWIGLKSHFS 441          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_ORYSJ (Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.530e-81
Identity = 138/172 (80.23%), Postives = 151/172 (87.79%), Query Frame = -3
Query:  294 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEADNESD 809
            VPYKYDLSKFCPFNTVL DH DPS+NTVLTAPTDKPGVALLDFVIFPPRWLVAE+TFRPPYYHRNCMSEFMGLI G YEAKADGFLPGGASLHSCMTPHGPDTKTYEATI+R     P +++ T+AFMFES LIPR+C WAL+SP  D DYYQCWIGL+SHFS++     S+
Sbjct:  294 VPYKYDLSKFCPFNTVLFDHADPSVNTVLTAPTDKPGVALLDFVIFPPRWLVAENTFRPPYYHRNCMSEFMGLIYGIYEAKADGFLPGGASLHSCMTPHGPDTKTYEATISRPDANEPSRLSGTLAFMFESALIPRVCQWALDSPSRDLDYYQCWIGLKSHFSHDNGGATSE 465          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_DICDI (Homogentisate 1,2-dioxygenase OS=Dictyostelium discoideum GN=hgd PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.594e-54
Identity = 107/161 (66.46%), Postives = 124/161 (77.02%), Query Frame = -3
Query:  327 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITD-TMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSH 806
            PYKYDLS FC  N+V  DH DPSI TVLTAPT++ GVA  DFVIFPPRWLV E+TFRPPY+HRNCMSEFMGLIRG YEAK +GFLPGG SLHSCMTPHGPD+ T+ A I    K  P KI D  +AFMFES LI  I  +A ++ F+D DY++CW GL+ +
Sbjct:  272 PYKYDLSLFCVVNSVSFDHLDPSIFTVLTAPTNEVGVAAADFVIFPPRWLVQENTFRPPYFHRNCMSEFMGLIRGVYEAKKEGFLPGGGSLHSCMTPHGPDSDTFYAAIKAELK--PTKIPDVALAFMFESSLILGISDYAKKN-FIDDDYWKCWQGLKDN 429          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PONAB (Homogentisate 1,2-dioxygenase OS=Pongo abelii GN=HGD PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.342e-52
Identity = 102/164 (62.20%), Postives = 119/164 (72.56%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITD-TMAFMFESCLIPRICPWALE-SPFMDHDYYQCWIGLRSHFS 806
            PYKY+L  F   N+V  DH DPSI TVLTA + +PGVA+ DFVIFPPRW VA+ TFRPPYYHRNCMSEFMGLIRG YEAK  GFLPGG SLHS MTPHGPD   +E   A  +K  P +I D TMAFMFES L   +  W L+ S  +D +Y++CW  L+SHF+
Sbjct:  274 PYKYNLKNFMVINSVAFDHADPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPDADCFEK--ASKAKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFT 435          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_MYXXD (Homogentisate 1,2-dioxygenase OS=Myxococcus xanthus (strain DK 1622) GN=hmgA PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.342e-52
Identity = 96/160 (60.00%), Postives = 118/160 (73.75%), Query Frame = -3
Query:  333 MVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLR 812
            +VPYKYDL++F   NTV  DH DPSI TVLT+P++ PG A  DFVIFPPRW+VAEHTFRPP++HRN MSEFMGL+ G Y+AKA GF PGG SLH+CM+ HGPD  +YE  I    K  P+KI DT+AFMFES  + R   +A+E+P +  DY  CW G +
Sbjct:  275 LVPYKYDLARFNTINTVSFDHPDPSIFTVLTSPSEVPGTANCDFVIFPPRWMVAEHTFRPPWFHRNVMSEFMGLVHGVYDAKAGGFAPGGGSLHNCMSGHGPDRTSYEQAIQADLK--PHKIKDTLAFMFESRWVIRPTRFAMETPALQQDYDACWAGFQ 432          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_MOUSE (Homogentisate 1,2-dioxygenase OS=Mus musculus GN=Hgd PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.342e-52
Identity = 102/164 (62.20%), Postives = 118/164 (71.95%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITD-TMAFMFESCLIPRICPWALES-PFMDHDYYQCWIGLRSHFS 806
            PYKY+L  F   N V  DH DPSI TVLTA + +PGVA+ DFVIFPPRW VA+ TFRPPYYHRNCMSEFMGLI+G YEAK  GFLPGG SLHS MTPHGPD   +E   A  +K  P +I D TMAFMFES L   +  W L++   +D +YY+CW  LRSHF+
Sbjct:  274 PYKYNLENFMVINAVAFDHADPSIFTVLTAKSLRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIKGHYEAKQGGFLPGGGSLHSAMTPHGPDADCFEK--ASKAKLEPERIADGTMAFMFESSLSLAVTKWGLKTCSCLDENYYKCWEPLRSHFT 435          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_HUMAN (Homogentisate 1,2-dioxygenase OS=Homo sapiens GN=HGD PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.672e-52
Identity = 102/164 (62.20%), Postives = 118/164 (71.95%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITD-TMAFMFESCLIPRICPWALE-SPFMDHDYYQCWIGLRSHFS 806
            PYKY+L  F   N+V  DH DPSI TVLTA + +PGVA+ DFVIFPPRW VA+ TFRPPYYHRNCMSEFMGLIRG YEAK  GFLPGG SLHS MTPHGPD   +E   A   K  P +I D TMAFMFES L   +  W L+ S  +D +Y++CW  L+SHF+
Sbjct:  274 PYKYNLKNFMVINSVAFDHADPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPDADCFEK--ASKVKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFT 435          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEF5 (Homogentisate 1,2-dioxygenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=hmgA PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.814e-51
Identity = 99/163 (60.74%), Postives = 121/163 (74.23%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT  PG+A LDFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA+GFLPGGASLHSCM+ HGPD +T   T A  ++  P KI +TMAFMFE+  + R   +ALE P + +DY  CW  L   F+
Sbjct:  270 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVPGLANLDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAEGFLPGGASLHSCMSAHGPDGET--CTKAINAQLQPAKIDNTMAFMFETSQVLRPSQFALECPELQNDYDACWASLPVTFN 430          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEAE (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa GN=hmgA PE=3 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.675e-51
Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT  PG+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA GF+PGGASLHSCM+ HGPD ++ +  IA   K  P++I  TMAFMFE+  + R    ALE+P + +DY  CW  L S F+
Sbjct:  268 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVPGLANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAGGFVPGGASLHSCMSAHGPDAESCDKAIAADLK--PHRIDQTMAFMFETSQVLRPSRAALETPALQNDYDACWASLVSTFN 428          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEA8 (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain LESB58) GN=hmgA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.675e-51
Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT  PG+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA GF+PGGASLHSCM+ HGPD ++ +  IA   K  P++I  TMAFMFE+  + R    ALE+P + +DY  CW  L S F+
Sbjct:  268 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVPGLANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAGGFVPGGASLHSCMSAHGPDAESCDKAIAADLK--PHRIDQTMAFMFETSQVLRPSRAALETPALQNDYDACWASLVSTFN 428          
The following BLAST results are available for this feature:
BLAST of CN185673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_ARATH2.694e-8688.34Homogentisate 1,2-dioxygenase OS=Arabidopsis thali... [more]
HGD_ORYSJ1.530e-8180.23Homogentisate 1,2-dioxygenase OS=Oryza sativa subs... [more]
HGD_DICDI1.594e-5466.46Homogentisate 1,2-dioxygenase OS=Dictyostelium dis... [more]
HGD_PONAB4.342e-5262.20Homogentisate 1,2-dioxygenase OS=Pongo abelii GN=H... [more]
HGD_MYXXD4.342e-5260.00Homogentisate 1,2-dioxygenase OS=Myxococcus xanthu... [more]
HGD_MOUSE4.342e-5262.20Homogentisate 1,2-dioxygenase OS=Mus musculus GN=H... [more]
HGD_HUMAN9.672e-5262.20Homogentisate 1,2-dioxygenase OS=Homo sapiens GN=H... [more]
HGD_PSEF52.814e-5160.74Homogentisate 1,2-dioxygenase OS=Pseudomonas fluor... [more]
HGD_PSEAE3.675e-5159.51Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEA83.675e-5159.51Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185673 ID=CN185673; Name=CN185673; organism=Citrus sinensis; type=EST; length=814bp
GGCCCCCTTTTTTTTAGCATAAAGGACACACACCATACATATACACATTT
TTTAAAATTCCTTTTACATCAATTATATATGTACATCCAAGTTTTTATCA
CTACTTAGTACATTCACAAACACACAAACAAAAGCTATATATAACCCAAT
CATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTGTTTATAAATA
CTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTGGGGACCAAATCAGG
CGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTCCCCATCGCTT
TCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATCCAATCCAGCA
CTGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCCCAAGGGCAGA
TTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGTATCAGTGATC
TTGTATGGCCCAGCCTTGCTTCCACGTGCAATGGTGGCCTCATATGTCTT
CGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTCGCACCACCTG
GGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTATCAGACCCATA
AACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGAATGTATGCTC
TGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGCAATGCCACAC
CAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGATGGATCACCG
TGATCCACTAAAACAGTGTTGAAAGGACAGAACTTACTGAGATCATACTT
ATATGGTACCATAA
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