CN185652

Overview
NameCN185652
Unique NameCN185652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:154..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185652 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.251e-21
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = -1
Query:  300 MSDTCGNWDCADRSQCVKKGSSYAADFVDPDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 497
            MSDTCGN DCAD++QCVKKGSSY AD ++ + S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CN185652 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.414e-16
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = -1
Query:  297 TCGNWDCADRSQCVKKGSSYAADFVDPDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 488
            TCGN DC D+SQCVKKG+SY  D V+ + S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CN185652 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.846e-16
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = -1
Query:  303 MSDTCGNWDCADRSQCVKKGSSYAADFVDPDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 497
            MSD CGN DCAD SQCVKKG+S   D V+ D S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CN185652 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  303 MSDTCGNWDCADRSQCVKKGSSYAADFVDPDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 497
            MS  C N DC+D SQC KKG S+    V+ +   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CN185652 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = -1
Query:  300 MSDTCGNWDCADRSQCVKKGSSYAADFVDPDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 497
            MS  C N DCAD +QCVKKG+SY    V+ +   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CN185652 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = -1
Query:  300 MSDTCGNWDCADRSQCVKKGSSYAADFVDPDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 497
            MSD CGN DCAD+SQCVKKG+SY    V+ + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN185652 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = -1
Query:  300 MSDTCGNWDCADRSQCVKKGSSYAADFVDPDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 497
            MSD CGN DCAD+SQCVKKG+SY    V+ + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN185652 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.238e-12
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = -1
Query:  300 MSDTCGNWDCADRSQCVKKGSSYAADFVDPDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 497
            MSD CGN DCAD+SQCVKKG+SY    VD + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CN185652 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = -1
Query:  300 MSDTCGNWDCADRSQCVKKGSSYAADFVDPDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 497
            MSD CG+ DCAD+SQCVKKG+SY    VD + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CN185652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA3.251e-2165.15Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.414e-1656.25Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.846e-1663.08Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV5.028e-1453.85Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO5.028e-1454.55Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ5.028e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI5.028e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.238e-1250.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI4.706e-1248.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185652 ID=CN185652; Name=CN185652; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTGTAGACTAACAATAATACATTAAACTTTAACCA
CCCAAGGCCACGGTCATGGCCATGGCCATATATTACATGATTATGAAGAA
GGAAACACAAAACATTACGAGTGATGGGTGACACAACACGCACATCACTC
CACACACTAGTAGTAGACCATCATAAAAACGAAGTAGAGAATTGTTCTGT
TTTTTTTTAATCACCCTTACATTATTCTTAACCCCCACAATATTTAGGCA
CACTTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTATTAGTGACTA
CCACAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTTGCAGTTACC
TTCAGCCTCAGCAGCCTGAACGTCCATGACAACAACGGTGCTGACAAAGC
TCAAGTCAGGGTCGACGAAATCAGCAGCATAGCTGCTTCCCTTCTTCACA
CACTGGCTCCTGTCAGCGCAGTCCCAGTTGCCGCAGGTGTCCGACATGTT
GATTGAGCTTAAAACTTAAAACTTAAAACTGGAAATAGAGGGCTCTTTCC
T
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