CN185648

Overview
NameCN185648
Unique NameCN185648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH1_HUMAN (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Homo sapiens GN=ECH1 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.959e-44
Identity = 98/222 (44.14%), Postives = 142/222 (63.96%), Query Frame = 1
Query:   34 EESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF-GTSYELDQGVRLVAEGIAEKSPL 693
            + SY+S+++   +    V+++ LNRP++RNA+++ F+ E  +  + + ++ +  A+V+SG G  F +GIDL  ++S        D  R S   R  I   Q+    IERC KPVIA++HG CIGGGVD+VTACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + ELA T R+    EA   GLVSRVF      LD  + L AE I+ KSP+
Sbjct:   52 DHSYESLRVT--SAQKHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLDAALALAAE-ISSKSPV 270          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH1_PONAB (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Pongo abelii GN=ECH1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 96/222 (43.24%), Postives = 142/222 (63.96%), Query Frame = 1
Query:   34 EESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF-GTSYELDQGVRLVAEGIAEKSPL 693
            + SY+S+++   +    V+++ LNRP++RNA+++ F+ E  +  + + ++ +  A+V+SG G  F +G+DL  ++S        D  R S   R  I   Q+    IE+C KPVIA++HG CIGGGVD+VTACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + ELA T R+    EA   GLVSRVF      LD  + L AE I+ KSP+
Sbjct:   52 DHSYESLRVT--SAQKHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGVDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIEKCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLDAALALAAE-ISSKSPV 270          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH1_MOUSE (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Mus musculus GN=Ech1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.270e-43
Identity = 92/221 (41.63%), Postives = 138/221 (62.44%), Query Frame = 1
Query:   34 EESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            + +Y+SI++   +    V+++ LNRP +RNA++R F+ E  +    + ++ +  A+V+SG G  F SGIDL  ++S     +  D  R +   R  I   Q   T IE+C KPVIA+IHG CIGGGVD+V+ACDIR+C++DAFF +KEVD+ + AD+GTLQRLP ++G  + + EL  + R+    EA + GLVSRVF     +      +A  I+ KSP+
Sbjct:   51 DHNYESIQVT--SAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASELMQPSGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIRYCTQDAFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSRVFQDKDAMLNAAFALAADISSKSPV 269          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH1_RAT (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Rattus norvegicus GN=Ech1 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.694e-43
Identity = 93/221 (42.08%), Postives = 137/221 (61.99%), Query Frame = 1
Query:   34 EESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            + +Y+SI++   +    V+++ LNRP +RNA++R F+ E  +    + ++ +  A+V+SG G  F SGIDL  ++S        D  R +   R  I   Q   T IE+C KPVIA+IHG CIGGGVD+++ACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + EL  T R+    EA + GLVSRVF     +      +A  I+ KSP+
Sbjct:   51 DHNYESIQVT--SAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPV 269          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH1_DICDI (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Dictyostelium discoideum GN=ech1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.564e-36
Identity = 89/233 (38.20%), Postives = 130/233 (55.79%), Query Frame = 1
Query:   10 FFTSAKQMEE-----SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            FFT+A           YK +++E K  ++ V  L L RP Q N++  +F+ EF      +  +  +  ++L G G    +G++L  ++ +    +   + + +    + IR  Q ++  I +C KP IA IHGACIGGGVD++TACDIR CS DA FS++E  L+I ADLGTLQR+  IVG G A ELALTG+      A+   LV+ V+     L    R +A  IA+ SPL
Sbjct:    6 FFTNATPSTSILKITDYKYLRLE-KNDSTFVAELVLCRPKQYNSMDDDFYNEFISIYDEIQNDSKIRCVILRGEGKGLTAGLNLGKIAPLITGDSEVSQSQNNLDLFKMIRRWQASLDKINKCSKPTIALIHGACIGGGVDMITACDIRLCSSDAKFSIRETKLSIIADLGTLQRISKIVGSGFARELALTGKDIDAKTAERFNLVNHVYPDHDTLLSEGRKLALSIAQNSPL 237          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: YNGF_BACSU (Putative enoyl-CoA hydratase/isomerase yngF OS=Bacillus subtilis GN=yngF PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 1
Query:   76 NSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            N  +  + LNRP   NALS E        +  ++ N N+  ++L+GTG+  FC+G DLK    + +           ++    +  +Q     ++   +PVIA+I+G+ +GGG+++  ACD+R  ++ A   + E  LAI    G  QRLP ++G G A E   TGRR    EAKE+GLV  V
Sbjct:   11 NEHMALITLNRPQAANALSAEMLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKE-----------DQVLESVSLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPRLIGRGKAKEFIYTGRRVTAHEAKEIGLVEHV 182          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHM_CAEEL (Probable enoyl-CoA hydratase, mitochondrial OS=Caenorhabditis elegans GN=ech-6 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 77/229 (33.62%), Postives = 116/229 (50.66%), Query Frame = 1
Query:    7 AFFTSAKQMEESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            AF + A +M      IKIE       V  + LNRP   NAL  +  TE   AL  LD + +V AIV++G+   F +G D+K +++  +   +T  G F   +           TA+   +KPVIA+++G  +GGG ++   CDI +  + A F   E+++      G  QR     G   AME+ LTG      EAKE G+VS++F     + + V+L  E IA++SPL
Sbjct:   25 AFSSKAPEM------IKIEKVGEKQNVALIKLNRPKALNALCAQLMTELADALEVLDTDKSVGAIVITGSERAFAAGADIKEMTN--NEFATTFSGSFLSNW-----------TAVSDVKKPVIAAVNGFALGGGNELAMMCDIIYAGEKARFGQPEINIGTIPGAGGTQRWARAAGKSFAMEVCLTGNHVTAQEAKEHGIVSKIFPADQVVGEAVKL-GEKIADQSPL 233          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHM_MOUSE (Enoyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.251e-24
Identity = 76/218 (34.86%), Postives = 113/218 (51.83%), Query Frame = 1
Query:   40 SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            +++ I  E K  NS V  + LNRP   NAL      E  +AL + +Q+P V AIVL+G    F +G D+K + +       T +  +S KF        D +T   R +KPVIA+++G  +GGG ++   CDI +  + A F   E+ L      G  QRL   VG   AME+ LTG R    +AK+ GLVS++F     +++ ++  AE IA  S +
Sbjct:   32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEQDPAVGAIVLTGGDKAFAAGADIKEMQN------RTFQDCYSSKFLSH----WDHIT---RVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVEKLVEEAIQ-CAEKIASNSKI 235          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHM_RAT (Enoyl-CoA hydratase, mitochondrial OS=Rattus norvegicus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 73/218 (33.49%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   40 SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            +++ I  E K  NS V  + LNRP   NAL      E  +AL + +++P V AIVL+G    F +G D+K + + T     +  G+F   +             I R +KPVIA+++G  +GGG ++   CDI +  + A F   E+ L      G  QRL   VG   AME+ LTG R    +AK+ GLVS++F     +++ ++  AE IA  S +
Sbjct:   32 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYS--GKFLSHWDH-----------ITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQ-CAEKIANNSKI 235          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHM_BOVIN (Enoyl-CoA hydratase, mitochondrial OS=Bos taurus GN=ECHS1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.489e-23
Identity = 71/209 (33.97%), Postives = 106/209 (50.72%), Query Frame = 1
Query:   67 KTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            K  NS V  + LNRP   NAL      E  +AL + +++P V AIVL+G    F +G D+K + S+T          F   +        D +T   R +KPVIA+++G  +GGG ++   CDI +  + A F   E+ +      G  QRL   VG   AME+ LTG R    +AK+ GLVS++F     +++ ++  AE IA  S +
Sbjct:   41 KGRNSNVGLIQLNRPKALNALCNGLIVELNQALQAFEEDPAVGAIVLTGGEKVFAAGADIKEMQSLT----------FQNCYSGGFLSHWDQLT---RVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETVVEEAIQ-CAEKIASNSKI 235          
The following BLAST results are available for this feature:
BLAST of CN185648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
ECH1_HUMAN1.959e-4444.14Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_PONAB5.699e-4443.24Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_MOUSE1.270e-4341.63Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_RAT3.694e-4342.08Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_DICDI2.564e-3638.20Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
YNGF_BACSU1.559e-2533.88Putative enoyl-CoA hydratase/isomerase yngF OS=Bac... [more]
ECHM_CAEEL2.036e-2533.62Probable enoyl-CoA hydratase, mitochondrial OS=Cae... [more]
ECHM_MOUSE2.251e-2434.86Enoyl-CoA hydratase, mitochondrial OS=Mus musculus... [more]
ECHM_RAT1.117e-2333.49Enoyl-CoA hydratase, mitochondrial OS=Rattus norve... [more]
ECHM_BOVIN2.489e-2333.97Enoyl-CoA hydratase, mitochondrial OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185648 ID=CN185648; Name=CN185648; organism=Citrus sinensis; type=EST; length=695bp
AGGCTTGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATC
GATAAAAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATC
TTAACCGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAA
TTCCCTAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCAT
CGTCCTCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAA
CACTAAGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTC
TCCGAGAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGC
CATCGAGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTA
TCGGAGGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCA
AAAGATGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGA
TCTCGGGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGA
TGGAATTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAG
TTGGGTCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGG
TGTCAGGCTTGTTGCCGAGGGAATTGCTGAAAAATCTCCTCTTGC
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