CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:193..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.446e-79
Identity = 143/224 (63.84%), Postives = 161/224 (71.88%), Query Frame = 1
Query:   91 KTGGQISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW-DYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            K G +++AKFELKPPPYPLN LEP MS+ TLEFHWGKHH+ YV+NL KQ+VGTEL DGKSLE++++ SYNKGD+LPAFNNAAQ WNHDFFW                 LIERDFGS             TQFGSGWAWL Y+            P P E D  L+V+K+PNAVNPLVW  Y  LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSW++VS RLE
Sbjct:   18 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTEL-DGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLE 239          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.009e-72
Identity = 134/215 (62.33%), Postives = 150/215 (69.77%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            KFEL+PPPYP++ALEPHMS  T EFHWGKHHRAYVDNLNKQI GTEL DGK+LED+++ +YNKG  LPAFNNAAQAWNH FFW                 LI RDFGS             TQFGSGWAWL YK                 ++K L +VKTPNA NPLV  Y+ LLTIDVWEHAYYLDFQNRRPDYIS+FM+KLVSWE+VS RL+
Sbjct:    1 KFELQPPPYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTEL-DGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKP----------------EEKKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLK 198          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 254.603 bits (649), Expect = 4.334e-67
Identity = 127/218 (58.26%), Postives = 145/218 (66.51%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            ++A + LKPPP+ L+ALEPHMSK TLEFHWGKHHRAYVDNL KQ++GTEL +GK LE ++ ++YN GDLLPAFNNAAQAWNH+FFW                 L+ERDF S             TQFG+GWAWL Y                   ++ L VVKTPNAVNPLV     LLTIDVWEHAYYLDFQNRRPDYI  FM  LVSWE+VS RLE
Sbjct:    7 VTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS------------------NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLE 205          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 4.364e-43
Identity = 94/207 (45.41%), Postives = 113/207 (54.59%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 756
            PY   ALEP +SK TLEFH  KHH AYV+N N  + GT+L D +S+EDV+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV                    + +L V KT NA NP+    + LLT+DVWEHAYYLD+QNRRPDYI+ F+ KLV+W+ V+  L
Sbjct:    9 PYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDL-DNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLVLD------------------NGTLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVAANL 196          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.364e-43
Identity = 94/214 (43.93%), Postives = 117/214 (54.67%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 756
            F   P P+P +ALEP+ M  +T ++H+GKHH AYV NLNK + GT + +  SLEDV+  S+     +  FNNAAQ WNH FFW                  I+  FGS             TQFGSGWAWLV                  +   +L V KTPNA NPLV     LLT+DVWEHAYYLDFQN RP +I  F+D LV+W+ V++ L
Sbjct:    3 FTQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVEGTPM-ESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKAGGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWLV------------------DDGGTLKVTKTPNAENPLVHGQKPLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVAQNL 197          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 4.364e-43
Identity = 92/208 (44.23%), Postives = 115/208 (55.29%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 738
            F  +P PY  NALE + M  +T E+H+GKHH+AYVDNLNK   GTEL D KSLE+V+  ++        FNNAAQ WNH FFW                  I +DFGS             TQFGSGWAWL+                  +   +L V KTPNA NPL     +LLT+DVWEHAYY+DF+N RP +I  ++D LV+W+
Sbjct:    3 FVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELAD-KSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLI------------------DDGGTLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWD 191          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.188e-40
Identity = 89/210 (42.38%), Postives = 112/210 (53.33%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVS 747
            +EL   P+   AL P+++K+TLEFH  KHH AYV+N N  +  T+L DG+ +E V+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV                    + +L + KT NA  P+    + LLTIDVWEHAYYLD+QNRRPDYIS F++KL +W+  S
Sbjct:    3 YELPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVKDTDL-DGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKPNGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLVLD------------------NGTLKITKTGNADTPIAHGQTPLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFAS 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.006e-39
Identity = 88/214 (41.12%), Postives = 117/214 (54.67%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            F L   PY L+AL PH+SK+TLE+H+GKHH  YV NLNK I GTE  +  +LE++++ +  KG +   FNNAAQ WNH F+W                  I + FGS             T FGSGWAWLV                  ++  +L ++ T NA  P+    ++LLT DVWEHAYY+D++NRRPDYI  F   LV+W+  S  L+
Sbjct:    3 FTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEF-ESMTLEEIIMKA--KGGI---FNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLV-----------------QDQSGALKIINTSNAGTPMTEGLNALLTCDVWEHAYYIDYRNRRPDYIEAFW-SLVNWDFASSNLK 192          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.993e-39
Identity = 90/216 (41.67%), Postives = 120/216 (55.56%), Query Frame = 1
Query:  118 FELKPPPYPLNALEP-HMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA--FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 756
            FEL   PY  +AL    MSK+TLE+H   HH+AYVDN NK I GTE  +GKS+E++V  +Y  G +  +  FNNA+Q WNH  FW                  +   FGS              QFGSGWAWLV                  + D +L + KT N VNPL +  ++LL  DVWEH+YY+DF+N+RP Y++ F+DKLV+WE+V+ R+
Sbjct:    3 FELPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTEW-EGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGPGEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLV-----------------KDSDGALKITKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWENVASRM 200          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.478e-38
Identity = 90/213 (42.25%), Postives = 112/213 (52.58%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 756
            FEL   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV                    D  L +V T NA  PL  D + LLT+DVWEHAYY+D++N RP+Y+  F   LV+WE V+K L
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLV-----------------KSADGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFW-ALVNWEFVAKNL 191          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODF_SOYBN6.446e-7963.84Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL2.009e-7262.33Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH4.334e-6758.26Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_SYNY34.364e-4345.41Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PLEBO4.364e-4343.93Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_ANASP4.364e-4344.23Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_SYNE71.188e-4042.38Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_LEGPH1.006e-3941.12Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_RHOCA4.993e-3941.67Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_SALTY2.478e-3842.25Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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