CN185643

Overview
NameCN185643
Unique NameCN185643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185643_ssr392 microsatellite CN185643_ssr392:392..403. BLAST: Citrus ESTs to Prunus persica proteins V1
CN185643_ssr480 microsatellite CN185643_ssr480:480..491. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1336 contig Csv1_Contig1336:1076..1594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185643 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.337e-30
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:  105 TINSSKGTGYPKPSIDCGGACHARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            T N+     Y    IDCGGAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   30 TSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of CN185643 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 3.108e-28
Identity = 54/73 (73.97%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  111 NSSKGTGYPKPSIDCGGACHARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            NS K  GY K  IDCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   27 NSQKKNGYAK-KIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of CN185643 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.035e-23
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  111 NSSKGTGYPKPSIDCGGACHARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            +S  G G  K  IDCGG C  RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   29 DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of CN185643 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.765e-23
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 3
Query:  102 HTINSSK-GTGYPKPSIDCGGACHARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            H  + +K G G  K  IDCGG C  RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   25 HAADGAKVGEGVVK--IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CN185643 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 3
Query:  117 SKGTGYPKPSIDCGGACHARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            S+G  +P+   DC   C  RC  +S    C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   45 SEGRLHPQ---DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CN185643 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 28/60 (46.67%), Postives = 31/60 (51.67%), Query Frame = 3
Query:  150 DCGGACHARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            DC   C  RC  +S    C   C  CCA C CVP G  GN + CPCY N  T  G+ KCP
Sbjct:   37 DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CN185643 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 25/59 (42.37%), Postives = 30/59 (50.85%), Query Frame = 3
Query:  153 CGGACHARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 329
            C   C  RC  +   + C + CG CC  C CVP GT GN   CPCY +     G+ KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
The following BLAST results are available for this feature:
BLAST of CN185643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SNAK2_SOLTU4.337e-3072.00Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH3.108e-2873.97Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH1.035e-2365.75Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH1.765e-2362.34Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GAST1_SOLLC2.643e-1145.07Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC4.509e-1146.67Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
SNAK1_SOLTU7.691e-1142.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185643 ID=CN185643; Name=CN185643; organism=Citrus sinensis; type=EST; length=519bp
GCAGTTATAAGCATAACTAATTGTAAGCCATGGCCATCTCCAAAGCTCTT
ATTGCTTCAGTCCTCCTCTCACTTGTTGTTTTTCATCTCGTTGAAGCTGA
GCATACAATTAACTCAAGCAAAGGAACTGGTTATCCAAAACCATCAATTG
ACTGTGGAGGTGCATGCCACGCCAGGTGCCGATTATCGTCGAGGCCAAAC
CTGTGCCACAGGGCATGTGGTACCTGCTGCGCCCGCTGCAATTGTGTTCC
TCCAGGCACTGCAGGCAACACTGAGGTCTGCCCTTGCTACGCCAATATGA
CCACCCACCACGGCAGACGCAAGTGCCCTTGAAATATTTTAAGTTGAAAC
GACGTCGTCTACTTCTGAATTAATTTTTTTGGAGCTTCTATTCTCTCTCT
CTCTATGTATAAATATGTGCGTGTGCGTGTGCGTGTGTTGCCTGTGGCCA
GAAAAACAGAGTTGATCCATATTCCCATGAATAAATAAATAAATCCATTT
CATGTTAAAAAAAAAAAAA
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