CN185641

Overview
NameCN185641
Unique NameCN185641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13756 contig Csv1_Contig13756:8..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGYKRYERRIE 676
            PPA+K  VE++P + V   + +A   +C VCL E+E GE  R++PC+H FH++CI  WLG   SCP+CR+++P +  E  Y+ Y++  E
Sbjct:   53 PPAAKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPE--YEEYKQEKE 138          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 2
Query:  350 IEGTSSLETLLRNFV--------GKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGYKRYER 667
            I+  +  E LL+N          G+ G PPA+K+++EA+ + +V  SE E +   C VC +   +GE  +++PC H +H +CI  WLG + SCPVCR+++  ++ E   +R +R
Sbjct:  203 IDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVM-VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKR 315          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 39/97 (40.21%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  410 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--------EEESGYKRYERRIE 676
            PPASK  VE++P + V   + +A   +C VCL E+E GE  R++PC+H FH+ CI  WLG   SCP+CR+++P +        +E++  ++ E R+E
Sbjct:   53 PPASKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEKARRQQKEHRLE 148          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  356 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC E+Y +GE  R++PC H FH +CI  WL    SCPVCR
Sbjct:  187 GLDTIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  356 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL    +CPVCR
Sbjct:  184 GLDTIITQLLNQFENTGPPPADNEKIQALPTIQITE-EHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  356 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL    +CPVCR
Sbjct:  184 GLDTIITQLLNQFENTGPPPADTDKIQALPTIQITE-EHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  356 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL    +CPVCR
Sbjct:  183 GLDTIITQLLNQFENTGPPPADTEKIQALPTIQITE-EHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 268          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  356 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC ++Y +GE  R++PC H FH  CI  WL    SCPVCR
Sbjct:  185 GLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 270          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  356 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 616
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC ++Y +GE  R++PC H FH  CI  WL    SCPVCR
Sbjct:  188 GLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCR 273          
BLAST of CN185641 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  356 GTSSLETLLRNFVGK---DGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEE 637
            G + L+ ++   +G+    G PPA K  + ++P++ V + E+  +G EC VC E+Y V E  R++PC H FH++CI  WL +  +CPVCR  +  E+
Sbjct:  181 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQ-EQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 276          
The following BLAST results are available for this feature:
BLAST of CN185641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RN181_XENTR2.237e-1642.70E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
CIP8_ARATH4.985e-1635.09E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_XENLA1.450e-1540.21E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN126_MOUSE2.474e-1544.83RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
R126A_XENLA5.511e-1543.68RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
R126B_XENLA7.198e-1543.68RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN126_XENTR9.400e-1543.68RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_HUMAN9.400e-1543.68RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN1.228e-1443.68RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN115_HUMAN1.228e-1437.11RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185641 ID=CN185641; Name=CN185641; organism=Citrus sinensis; type=EST; length=692bp
CGTCTTAAAGGCAGATTCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATC
GGATTGTTGATCACCCTAGTACAGATCTCTCAGAAAAGATTTGATCTTTC
TGTCAAAATTTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGT
CTCATCGCTGTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTGTC
TACCCTTTGTCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCC
CAGAATTCTCAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTC
AAGCGAAAGAATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGA
TTGAAGGGACTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAA
GATGGCCAGCCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTAT
CAAAGTCGGTGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGT
GTTTAGAGGAGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAG
CACAAGTTTCATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTC
GTGTCCTGTTTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCT
ACAAAAGATATGAGCGAAGGATAGAAATTTGGGTTAGTTTTT
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