CN185618

Overview
NameCN185618
Unique NameCN185618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:126..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40
Identity = 99/198 (50.00%), Postives = 121/198 (61.11%), Query Frame = 3
Query:  117 IPRALRCTVAPSATSASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV--RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 692
            +PRALR  V P A S SR FNTNA   Y                                    TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIR           S   RR+TSRI+LPEK+Y+TD+IKAEMKNGVLKV +PK+KE+ER ++  + VD
Sbjct:   20 VPRALRA-VRPVAAS-SRLFNTNAARNYEDGVDRNHHSNRHVSRHGGDFFSHILDPFTP-----TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDERNNIRHINVD 210          
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.250e-38
Identity = 95/184 (51.63%), Postives = 112/184 (60.87%), Query Frame = 3
Query:  147 PSATSASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXX--SVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 692
            P A+SASR FNTNA+ QY                                     RSLSQVLN +D +T+NP  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+             S RR++SRIDLPEKLY+ D IKAEMKNGVLKVTVPK+KEEER +V  VKVD
Sbjct:   23 PVASSASRSFNTNAMRQYDQHSDDRNVDVYRHSFPRTRRDDLLLSDVFDPFSPP-RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202          
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.358e-37
Identity = 94/206 (45.63%), Postives = 117/206 (56.80%), Query Frame = 3
Query:  117 IPRALRCTVAPSATS------ASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV----RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 692
            + R L  ++AP + S      +SR FNTNAV  Y                                    TRS+SQVLN MDQ  ENP  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIR                 RR+TSRI LP+K+Y+ D+IKAEMKNGVLKV +PK+KE+ER DV Q++++
Sbjct:    7 LKRLLSSSIAPRSRSVLRPAVSSRLFNTNAVRSYDDDGENGDGVDLYRRSVPRRRGDFFSDVFDPFSP--TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQIEIN 210          
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.023e-37
Identity = 76/131 (58.02%), Postives = 96/131 (73.28%), Query Frame = 3
Query:  309 TRSLSQVLNFMDQMTENPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 692
            TRS+ Q++N MDQ+ ENPF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+             RRY+SRI+L   LY+ D IKAEMKNGVLKVTVPK+KEEE+ DVFQV VD
Sbjct:   74 TRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVMVD 204          
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.305e-36
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:  393 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 692
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+           S RRYTSRIDLP+KLY+ DQI+AEMKNGVLKV VPK+KEEER DV  VKV+
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211          

HSP 2 Score: 27.335 bits (59), Expect = 2.305e-36
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  287 CV*SIFTNKEPEPGPELHGSDDGES 361
            CV SIF++ E EPG E  G   G+S
Sbjct:   72 CVGSIFSDSEFEPGSEHDGPGHGQS 96          

HSP 3 Score: 25.7942 bits (55), Expect = 2.305e-36
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  132 RCTVAPSATSASRFFNTNAVHQY 200
            R  + P+A+++ R F+TNA+ QY
Sbjct:   18 RSLLRPAASASHRSFDTNAMRQY 40          
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.413e-28
Identity = 68/129 (52.71%), Postives = 88/129 (68.22%), Query Frame = 3
Query:  312 RSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 692
            +SL ++L+ MD +   P        LRRGW+AKE+++AL+L +DMPGLGKE V+V  EQN+LVI+                RY+ RI+L  ++YR DQIKAEMKNGVLKV VPKVKEE+R DVFQV V+
Sbjct:   93 QSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQRRDVFQVNVE 220          
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS26M_ORYSJ (26.2 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP26.2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 67/135 (49.63%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  315 SLSQVLNFM-DQMTENPFFSGTRG----GLRRG--WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 692
            SL ++L  M D         GT G      RRG  W AKE DDA++L + MPGLGKE V+V  EQN+LVI+                RYT RI+LP   ++ D+IKAEMKNGVL+V VPK+KEEER DVFQV V+
Sbjct:  114 SLGRLLALMEDAAVATAAAPGTNGLATAAARRGGWWVAKEDDDAVHLKVSMPGLGKEHVKVWAEQNSLVIKGEGEKDPEDDADAAPPRYTRRIELPADAFKMDKIKAEMKNGVLRVAVPKLKEEERKDVFQVNVE 248          
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  312 RSLSQVLNFMDQMTEN--PFFSGTRGG-----LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 686
            R++ Q+L+ MD+M E+  P     RGG     +R  WD KE +  + +  DMPGL KEDV++S+E N LVI    +           SV  Y +R+ LP+   + D+IKAE+KNGVL +T+PK K E +    Q++
Sbjct:   93 RTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEK-DKIKAELKNGVLFITIPKTKVERKVIDVQIQ 227          
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  312 RSLSQVLNFMDQMTENPF-FSGTR---GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTS---RIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 686
            RS+ Q+L+ MD++ E+   F G     G +R  WD K+ +  + +  DMPGL KEDV+VS+E + LVI    +           S R Y+S   R+ LP+   + D++KAE+KNGVL +T+PK K E +    QV+
Sbjct:   47 RSMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEK-DKVKAELKNGVLYITIPKTKVERKVIDVQVQ 181          
BLAST of CN185618 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 45/135 (33.33%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  312 RSLSQVLNFMDQMTENPF-FSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI-----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 686
            R++ Q+++ MD++ E+   F G+R    G +R  WD K+ ++ + +  DMPGL KE+V+VS+E + LVI     +           +   Y +R+ LP+ + + D++KAE+KNGVL +++PK K E++    ++K
Sbjct:  108 RTMRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDK-DKVKAELKNGVLLISIPKTKVEKKVTDVEIK 241          
The following BLAST results are available for this feature:
BLAST of CN185618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS235_ARATH2.976e-4050.0023.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA1.250e-3851.63Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS23M_ARATH2.358e-3745.6323.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU4.023e-3758.02Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS22M_SOYBN2.305e-3667.00Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS24M_ORYSJ3.413e-2852.7124.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ORYSJ1.484e-2349.6326.2 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH2.711e-1738.9725.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN3.314e-1538.24Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY3.314e-1533.33Small heat shock protein, chloroplastic OS=Petunia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185618 ID=CN185618; Name=CN185618; organism=Citrus sinensis; type=EST; length=701bp
GAGGGCCGCACTCACAAAAAGTATTTTGAAATCTCTGCATTGTTTCGTGC
TTTCTTTAAGAATTCGGCTCAATGGCGTCCTCTCTTGCTCTCAAGAGGCT
TGCTTCTTCTAATGTCATACCCAGGGCTTTACGCTGCACCGTCGCTCCTT
CTGCTACTTCAGCATCTCGGTTCTTCAACACAAACGCTGTTCATCAATAC
GATGACGGCGGAGACGACCGTGATCTCGACATTGATCGCCGTTCCGCTCG
CTCTTTCCCTCGCCGTCGTGACGACTTCTTCTCAGATGTGTTTGATCCAT
TTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCATGGATCAGATG
ACGGAGAATCCTTTCTTCAGCGGCACACGTGGTGGACTGCGCAGAGGCTG
GGATGCTAAAGAAACCGATGATGCGTTGAACCTCAGCATCGACATGCCAG
GGCTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAGCAGAACACGCTGGTG
ATCAGAGGCGAGGGCGGAAAAGAAGGAGAGGACGAAGAGAGCGTGCGTAG
GTACACCAGCAGGATTGATTTGCCAGAGAAGCTCTACAGGACTGATCAGA
TCAAGGCTGAGATGAAGAATGGTGTGCTGAAAGTGACGGTGCCCAAGGTG
AAGGAAGAGGAGAGGGCTGATGTGTTCCAAGTGAAGGTTGATTAAAGAGT
T
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