CN185615

Overview
NameCN185615
Unique NameCN185615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185615_ssr102 microsatellite CN185615_ssr102:102..113. BLAST: Citrus ESTs to Prunus persica proteins V1
CN185615_ssr114 microsatellite CN185615_ssr114:114..128. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7001 contig Csv1_Contig7001:565..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185615 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.446e-30
Identity = 61/110 (55.45%), Postives = 85/110 (77.27%), Query Frame = -3
Query:  328 KLTKVRGIKKREFLAVKDCIENMGDGVDRLSQSVRELGHVGRAVGQDFTWHMSNVQTWVSAALTDENTCLDGFDGRFMDGNVKAAIRRRVTNVAQVTSNALALVNRFAAR 657
            +L K +G+K R++ A+ DC+E + D +DR+S+S  E+ ++  A G DFT+ MSNV+TWVSAALTDE TC+DGF G+ MDG +K ++R +V  VA+VTSNALALVN FAA+
Sbjct:   81 RLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAK 190          
The following BLAST results are available for this feature:
BLAST of CN185615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA1.446e-3055.4521 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185615 ID=CN185615; Name=CN185615; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTTTTTTTTTTCAAGCAATAGTTGGCCCCTTCTTTAGCTTCATT
TAGTTTTATTTTATTTAAACAAACCTCAAGTATCTTAAAAGAGGGAAAAA
AAACAACAACAACAGCAGCAGCAGCAGCAAAACACAAACTCTTATGTTTA
GATACTGACTGTACTTTTTGTTGGTTGCCCAGAAAACCAAAGTTTCTTAT
ATAAAACAGAAACTAGACTAAGCACGAACCTAAGGGATATCATATTGAGA
TACCATATTATACAGAAGACAGCAGAGGTCACCTTAGACGAAATCTAAGG
CTTCTCGGTGACTGCTGCAGCTTGGGGCCTAGCGGCGAATCGATTAACCA
AAGCAAGAGCGTTACTAGTGACTTGGGCAACATTTGTGACCCTTCTCCTG
ATCGCAGCCTTTACATTTCCATCCATGAAACGACCATCAAAACCATCTAA
GCAAGTGTTCTCATCAGTTAGGGCGGCACTAACCCAAGTCTGCACATTAC
TCATGTGCCACGTAAAGTCCTGGCCGACAGCTCGTCCCACATGGCCAAGC
TCCCTGACGGATTGACTAAGTCGGTCTACGCCGTCACCCATGTTCTCTAT
GCAGTCTTTCACAGCTAGGAACTCTCTCTTCTTGATTCCCCTAACTTTAG
TCAGCTTGC
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