CN185607

Overview
NameCN185607
Unique NameCN185607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1845 contig Csv1_Contig1845:581..1382. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 373.629 bits (958), Expect = 6.875e-103
Identity = 174/217 (80.18%), Postives = 198/217 (91.24%), Query Frame = -1
Query:  144 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTD-KYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLEKYAGVLYGLGVENGQNTH 791
            EYHY+TLK+NV++LK+IQLGLTFSDE GNLPTCGTD KYC+WQFNFREFD+  DI+A DSIELL+QSGI+F KNNE GID+ RF EL+MSSGIVL++++HWVTFHSGYDFGYLLKLLTCQNLP+TQ  FF +I +YFP VYDIKHLMKFCNSLHGGLNKLAELL+VERVGICHQAGSDSLLT+ TFRKL+ENFF  S+EKY+GVLYGLGVENGQ  H
Sbjct:   59 EYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVENGQIVH 275          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 5.820e-102
Identity = 173/213 (81.22%), Postives = 195/213 (91.55%), Query Frame = -1
Query:  153 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLEKYAGVLYGLGVENGQ 791
            +YHY+TLK+NV++LK+IQLGLTFS+E GNLPTCGTDKYC+WQFNFREFD++ DIFA DSIELLKQSGI+  KN   GID+ RF EL+MSSGIVL++++HWVTFHSGYDFGYLLKLLTCQNLPD+Q +FF LI +YFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT+ TFRKLKENFF   L KY+GVLYGLGVENGQ
Sbjct:   59 DYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 8.424e-93
Identity = 158/215 (73.49%), Postives = 186/215 (86.51%), Query Frame = -1
Query:  147 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLEKYAGVLYGLGVENGQNT 791
            + +Y+TLK NVD+LKLIQ+GLTFSDENGNLPTCGTDK+C+WQFNFREF++ EDI+A++SIELL+Q GI+F KN E GID +RFGELMMSSGIVL+D++ WVTFH GYDFGYL+KLLTC+ LP  Q +FF L+ +YFPTVYDIKHLM FCN L GGLN+LAEL+ VERVGICHQAGSDSLLT  +FRKLKE +F  S EKY GVLYGLGVE+G  T
Sbjct:   59 DLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRKLKERYFPGSTEKYTGVLYGLGVEDGTTT 273          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 5.301e-79
Identity = 140/208 (67.31%), Postives = 171/208 (82.21%), Query Frame = -1
Query:  171 YEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLEKYAGVLYGL 794
            YEY+Y TLK+NV+MLKLIQLGLT SDE GNLPTCGT+K C+WQFNFREF+V  D+FA DSIELL++S I+  KNNE G+DA RF EL+M SG+VL+D +HWVTFH GYDFGYLLKLL+ + LP+   +FF+ +  +FP VYDIK+LM FC +L+GGL K+AELL V+RVGI HQAGSDSLLT  TF K+KE FF+ SL KY+G L+GL
Sbjct:   68 YEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLRTFIKMKEFFFTGSLLKYSGFLFGL 275          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.024e-62
Identity = 121/232 (52.16%), Postives = 167/232 (71.98%), Query Frame = -1
Query:  120 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG-----VENGQ-NTH*KKGEKRE 791
            +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+ M F EL+M+SG+VL + + W++FHSGYDFGYL+K+L+   LPD +V+FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K++E FF   ++  KY G LYGLG     V+NG  N + ++  K++
Sbjct:   59 DYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQQ 285          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.508e-62
Identity = 118/219 (53.88%), Postives = 160/219 (73.06%), Query Frame = -1
Query:  156 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG-----VENG 791
            +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K++E FF   ++  KY G LYGLG     V+NG
Sbjct:   59 DYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 4.508e-62
Identity = 118/219 (53.88%), Postives = 160/219 (73.06%), Query Frame = -1
Query:  156 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG-----VENG 791
            +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K++E FF   ++  KY G LYGLG     V+NG
Sbjct:   59 DYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.508e-62
Identity = 118/219 (53.88%), Postives = 160/219 (73.06%), Query Frame = -1
Query:  156 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG-----VENG 791
            +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K++E FF   ++  KY G LYGLG     V+NG
Sbjct:   59 DYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.508e-62
Identity = 118/219 (53.88%), Postives = 160/219 (73.06%), Query Frame = -1
Query:  156 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG-----VENG 791
            +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL+M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K++E FF   ++  KY G LYGLG     V+NG
Sbjct:   59 DYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.004e-61
Identity = 118/219 (53.88%), Postives = 158/219 (72.15%), Query Frame = -1
Query:  156 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG-----VENG 791
            +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ + +FF ++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G  HQAGSDSLLT   F K++E FF   ++  KY G LYGLG     V+NG
Sbjct:   59 DYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
The following BLAST results are available for this feature:
BLAST of CN185607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1G_ARATH6.875e-10380.18Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH5.820e-10281.22Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1J_ARATH8.424e-9373.49Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1B_ARATH5.301e-7967.31Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CNOT7_DANRE2.024e-6252.16CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT7_MOUSE4.508e-6253.88CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN4.508e-6253.88CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK4.508e-6253.88CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_BOVIN4.508e-6253.88CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT7_XENLA1.004e-6153.88CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185607 ID=CN185607; Name=CN185607; organism=Citrus sinensis; type=EST; length=800bp
GGCCCCCCTTTTTTAAATAAGTATAAGAAGAATTTATAAATTTAAGTTGC
CAAAAGTATACAATGAAGTGTGGGCTTAAGGCACGGCACACTTACACATA
AAATAAACAGCTTTCTAAACTCCCTTTTTTCCCCCTTCTTTCAATGAGTA
TTTTGTCCATTCTCAACGCCTAAACCATATAAGACACCAGCATATTTTTC
CAAAGAGCTGCTAAAGAAGTTTTCTTTCAATTTTCGGAATGTACTAGCTG
TAAGCAAACTATCTGAACCTGCTTGATGACAAATCCCAACTCTTTCAACT
TCCAACAACTCAGCAAGTTTGTTCAATCCTCCATGAAGGCTATTACAAAA
CTTCATCAAGTGCTTGATATCATACACGGTCGGAAAATAAATTCTGATCA
AATTAAAGAACTCCACTTGCGTATCAGGCAGATTCTGGCACGTCAAAAGC
TTTAGCAAATACCCAAAATCATACCCACTATGAAATGTCACCCAATGCAT
GCTATCACTCAAAACAATCCCAGATGACATCATTAACTCACCAAATCTCA
TTGCATCAATACCTATCTCATTATTTTTTGTAAAATTAATCCCACTTTGT
TTCAAAAGCTCAATCGAATCATTGGCAAAGATATCCTCATTAACATCGAA
CTCCCGAAAATTAAATTGCCAAACACAATATTTATCTGTCCCACAAGTGG
GCAAGTTACCATTCTCATCTGAAAATGTCAGACCCAACTGGATGAGCTTT
AACATATCAACATTGCTTTTCAAAGTTTGGTAGTGATATTCATAAACTGC
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