CN185598

Overview
NameCN185598
Unique NameCN185598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185598_ssr123 microsatellite CN185598_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.911e-33
Identity = 84/157 (53.50%), Postives = 95/157 (60.51%), Query Frame = -3
Query:  187 SDKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFPADMVRESLQEMKYHREDGCSPVVALXXXXXXXXXXXXXXXXXXXXXXXKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSCGAAT 657
            S+KSYRGVRRRPWGKFAAEIRDSTRNG+RVWLGTF+S           AFSMRGS A LNF A+ V+ESL E+KY  EDGCSPVVAL                       K  + D DH  + +        NVVVFEDLG  YLE+LL SS  + T
Sbjct:   78 SEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVAL----------KRKHSMRRRMTNKKTKDSDFDHRSVKL-------DNVVVFEDLGEQYLEELLGSSENSGT 217          
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.953e-29
Identity = 76/161 (47.20%), Postives = 93/161 (57.76%), Query Frame = -3
Query:  199 DKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFPADMVRESLQEMK-YHREDGCSPVVAL--------XXXXXXXXXXXXXXXXXXXXXXXKMNNQDRDHHQLAVAVGSQLSQNVVVFEDLGADYLEQLLMSSC 654
            ++SYRGVR+RPWGKFAAEIRDSTRNG+RVWLGTFD            AF+ +GSLATLNFP ++VRESL++M+  +  DG SPV+AL                                 +           +V  Q S  +VVFEDLGA+YLEQLLMSSC
Sbjct:   83 ERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPRGKKRSSSSSSSSSNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLMSSC 243          
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 68/164 (41.46%), Postives = 92/164 (56.10%), Query Frame = -3
Query:  205 DKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFPADMVRESLQEMK-YHREDGCSPVVALXXXXXXXXXXXXXXXXXXXXXXXKMNNQDRDH-------------HQLAVAVGSQLSQNVVVFEDLGADYLEQLLMS 654
            +KSYRGVR+RPWGKFAAEIRDSTR G+RVWLGTFD+           AF+++GSLA LNFPAD+V ESL++M+  +  DG SPV+AL                          +    +              + +V +  + +  +VV EDLGA+YLE+L+ S
Sbjct:   79 EKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKKKSSSSSTLTSSPSSSSSYSSSSSSSSLSSRSRKQSVVMTQESNTTLVVLEDLGAEYLEELMRS 242          
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = -3
Query:  448 KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFPADMVRESL 651
            K YRGVRRRPWGK+AAEIRDS R+G RVWLGTF++           AF MRG+ A LNFP+++V  S+
Sbjct:   57 KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVNASV 124          
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = -3
Query:  442 KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFPADMVRESLQE 651
            K YRGVR+RPWGKFAAEIRD  R G RVWLGTFD+           AF +RGS A +NFP ++     Q+
Sbjct:  143 KHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEVANFKQQD 212          
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = -3
Query:  466 SSDKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFPAD 660
            +  + YRGVRRRPWGK+AAEIRD  + GVRVWLGTFD+           AF +RGS A LNFP +
Sbjct:   67 NDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131          
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  472 KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFP 651
            K YRGVR+RPWGKFAAEIRD  +NG RVWLGTF++           AF MRGS A LNFP
Sbjct:  115 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFP 174          
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  472 KSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFP 651
            K YRGVR+RPWGKFAAEIRD  +NG RVWLGTF++           AF MRGS A LNFP
Sbjct:  146 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205          
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = -3
Query:  472 YRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFP 645
            +RGVRRRPWGKFAAEIRD +RNG R+WLGTF++           AF++RG LA LNFP
Sbjct:   20 FRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFP 77          
BLAST of CN185598 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  472 YRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSXXXXXXXXXXXAFSMRGSLATLNFP 645
            YRGVRRRPWGK+AAEIRDS ++G RVWLGTFD+           A+SMRG  A LNFP
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFP 77          
The following BLAST results are available for this feature:
BLAST of CN185598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ERF92_ARATH2.911e-3353.50Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF93_ARATH1.953e-2947.20Ethylene-responsive transcription factor 15 OS=Ara... [more]
ERF94_ARATH1.003e-2541.46Ethylene-responsive transcription factor ERF094 OS... [more]
PTI5_SOLLC5.515e-1658.82Pathogenesis-related genes transcriptional activat... [more]
ERF5_TOBAC2.317e-1454.29Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF105_ARATH2.317e-1456.92Ethylene-responsive transcription factor ERF105 OS... [more]
EF101_ARATH2.317e-1463.33Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH2.317e-1463.33Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF98_ARATH5.162e-1462.07Ethylene-responsive transcription factor ERF098 OS... [more]
ERF97_ARATH5.162e-1463.79Ethylene-responsive transcription factor 14 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185598 ID=CN185598; Name=CN185598; organism=Citrus sinensis; type=EST; length=734bp
TTTTTTTTTTTTTTTAACGAAAACAAGAAATTTTGTATTAAAAGGAGAAA
AAAAAAAAAACAAATCACCTAAACCCCACTACTAGAGCACTATGATAATT
GACACCCTAAAAAAAAAAAAATTAATAATAATAAAGGAATCAGGTGGTTG
ATAATGAACGATGATGTTTGATCACCAAATAGTAGCAGTAGCAGCTCCAC
ATGAGCTCATCAAAAGTTGCTCTAGATAATCAGCTCCCAAATCTTCAAAC
ACCACCACATTTTGCGATAATTGTGACCCTACAGCTACAGCTAGTTGATG
GTGATCGCGATCTTGATTATTCATTTTGATTTTCTTGTTACTCACCGAAG
ATGATGATGAAGATTTGGACTTCTTTCTGATAGAGTGTCGTTTCTTGAGA
GCCACAACCGGCGAGCACCCATCTTCGCGGTGGTACTTCATTTCTTGAAG
AGATTCTCTGACCATATCTGCAGGAAAATTGAGGGTAGCCAGGGAACCCC
GCATTGAGAATGCAGCTTGATCGTAGGCTAAAGCAGCTGCCTCAGCGCTG
TCGAATGTGCCTAGCCAAACTCTAACCCCGTTTCTCGTGGAGTCCCTTAT
CTCCGCCGCAAATTTCCCCCACGGCCGCCTCCTCACGCCTCTGTATGACT
TGTCTGATGATGTCTTGCCCGATGATCCCTCCTCCTCCGCCGCTTTGCCG
CCACCATAATTACTTGAAGTTGAAGAAGTCACTT
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