CN185597

Overview
NameCN185597
Unique NameCN185597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13522 contig Csv1_Contig13522:331..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185597 vs. ExPASy Swiss-Prot
Match: UMP3_ARATH (Uncharacterized protein At5g10860, mitochondrial OS=Arabidopsis thaliana GN=At5g10860 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 4.008e-78
Identity = 110/139 (79.14%), Postives = 125/139 (89.93%), Query Frame = -2 
Query:  312 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 725
            MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD++K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKIIVQGRSSKSTKVGDIMTEE
Sbjct:    1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDVMKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 139

HSP 2 Score: 88.9669 bits (219), Expect = 4.008e-78
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = -1 
Query:  172 DNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY 312
            DNRIRHIPVI DKGMIGMVSIGDVVRAVV EHREEL RLNA+IQGGY
Sbjct:  160 DNRIRHIPVIKDKGMIGMVSIGDVVRAVVHEHREELQRLNAYIQGGY 206
The following BLAST results are available for this feature:
BLAST of CN185597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP3_ARATH4.008e-7879.14Uncharacterized protein At5g10860, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185597 ID=CN185597; Name=CN185597; organism=Citrus sinensis; type=EST; length=732bp
AGGCCACAAGGTCTTATTTCACGTCAAAGCATATTGACATCTGGGAAAAA
GGGAAAAAGAAAAAGCATACGACAGGAGATGCATACAACACGCCATATTT
ACAACCTCCTGTCTTATTAGTAGTACTCAAAAAACATGCATCACAACATT
TCATCTTGTCATCATCATCTAGTAACCTCCTTGTATAAAAGCATTCAGGC
GGTTTAACTCCTCACGATGCTCACTCACCACAGCACGAACAACATCTCCA
ATGGACACCATGCCTATCATTCCCTTGTCATCAATTACTGGAATGTGCCG
AATACGGTTATCTCTTCAGTCATGATGTCCCCAACTTTAGTTGACTTGGA
TGATCTTCCCTGCACTATGATCTTCCTGAGATAATCTCTCTCTGTGATGA
TCCCAGCAACAGACTTTTGCTCTCCGGGTTTGACGACGACCAACGCTCCA
ACGTTATGCTGTGTCATCGACTTGACAGCATCATAGACAGTGTCATCAGT
AGTGCACCAAAGCCAAGAGCCATCCGCACCTTTACCTTTTGCTTTCAATA
TGTCTGAAATTGTTGTGCTCTCGAAACCATGCTCTTCCATACGAGCAGAT
GAAACCGACTCGAACCGCGAAGAAACTACAGGCCTAAGCATCGGATTGAC
CAAACGGATGCGTTGCAGAACAGCAGATTTGACGATATTTCCATGGGATA
GAAATGATTGAATTGCCCCTTGCATTTTTTTT
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