CN185592

Overview
NameCN185592
Unique NameCN185592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:698..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 6.420e-108
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK+PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD+RIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEARARILQIHSRKM VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA
Sbjct:  222 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 424
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 6.420e-108
Identity = 198/203 (97.54%), Postives = 201/203 (99.01%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEK+PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD+RIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEARARILQIHSRKM VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA
Sbjct:  222 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 424
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 3.186e-107
Identity = 198/203 (97.54%), Postives = 200/203 (98.52%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEARARILQIHSRKM V+PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV HEDFNEGIIQVQAKKKASLNYYA
Sbjct:  221 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKASLNYYA 423
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 386.341 bits (991), Expect = 9.271e-107
Identity = 197/203 (97.04%), Postives = 200/203 (98.52%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD+RIKVIAATNRADILDPALMRSGRLDRKIE PHPSEEARARILQIHSRKM V+PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV HEDFNEGIIQVQAKKK+SLNYYA
Sbjct:  227 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA 429
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 382.874 bits (982), Expect = 1.025e-105
Identity = 196/203 (96.55%), Postives = 198/203 (97.54%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAF LAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEAR RILQIHSRKM V+ DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA
Sbjct:  221 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 423
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 8.424e-92
Identity = 169/203 (83.25%), Postives = 185/203 (91.13%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQT ATFLKLAGPQLVQMFIGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKM V PDVN+EELAR TDDFNGAQ KAVCVEAGM+ALRR ATE+ HED+ EGI++VQAKKKA+L YYA
Sbjct:  237 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 336.65 bits (862), Expect = 8.424e-92
Identity = 169/203 (83.25%), Postives = 185/203 (91.13%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQT ATFLKLAGPQLVQMFIGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKM V PDVN+EELAR TDDFNGAQ KAVCVEAGM+ALRR ATE+ HED+ EGI++VQAKKKA+L YYA
Sbjct:  237 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.201e-91
Identity = 169/203 (83.25%), Postives = 184/203 (90.64%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQT ATFLKLAGPQLVQMFIGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKM V PDVN+EELAR TDDFNGAQ KAVCVEAGM+ALRR ATE+ HED  EGI++VQAKKKA+L YYA
Sbjct:  240 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSKAVCVEAGMIALRRGATELTHEDHMEGILEVQAKKKANLQYYA 442
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.216e-90
Identity = 167/203 (82.27%), Postives = 183/203 (90.15%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQT ATFLKLAGPQLVQMFIGDGAKLVRDAF LAKEK+P IIFIDE+DAIG KRFDSE +GDREVQRTMLELLNQLDGF    ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKM V PDVN+EELAR TDDFNGAQ KAVCVEAG++ALRR ATE+ HED+ EGI++VQAKKKA+L YYA
Sbjct:  202 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 404
[Close]
BLAST of CN185592 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.539e-90
Identity = 169/203 (83.25%), Postives = 182/203 (89.66%), Query Frame = -2 
Query:  139 ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 747
            ARACAAQTN+T+LKLAGPQLVQMFIGDGAKLVRDAF LAKEK P IIFIDE+DAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD  IKVIAATNR DILDPAL+RSGRLDRKIE P P+EEARA ILQIHSRKM V  DVNF+ELARS++DFNGAQLKAVCVEAGM+ALRR  TE+ H DF EG ++V AKKK +L YYA
Sbjct:  219 ARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDFVEGCVEVMAKKKKTLEYYA 421
The following BLAST results are available for this feature:
BLAST of CN185592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PS6AA_ARATH6.420e-10897.5426S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM6.420e-10897.5426S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS6A_SOLLC3.186e-10797.5426S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ9.271e-10797.0426S protease regulatory subunit 6A homolog OS=Oryz... [more]
PS6AB_ARATH1.025e-10596.5526S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS6A_RAT8.424e-9283.2526S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN8.424e-9283.2526S protease regulatory subunit 6A OS=Homo sapiens... [more]
PRS6A_MOUSE3.201e-9183.2526S protease regulatory subunit 6A OS=Mus musculus... [more]
PR6AB_XENLA1.216e-9082.2726S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PRS6A_DICDI3.539e-9083.2526S protease regulatory subunit 6A homolog OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185592 ID=CN185592; Name=CN185592; organism=Citrus sinensis; type=EST; length=751bp
TGGGAGTTTCACTTCTTATTATAACATATTATGTACAGTACAACGATTAT
GTTTAATACCCATTTTTTAATATTCAACCCAAAATATATTAATTACCAAT
TGAAGTAGAGGCTAAAACTTCGCCTTTGGATGTGTCTATGCATAGTAGTT
TAAGCTAGCCTTTTTCTTAGCCTGCACCTGAATGATACCTTCATTGAAAT
CCTCATGGTTGACCTCAGTCGCATCACGGCGAAGAGCAAGCATCCCTGCT
TCAACACAAACAGCTTTTAGTTGTGCCCCATTGAAATCGTCAGTGGATCG
AGCAAGTTCTTCGAAGTTGACATCCGGGTGAACAGTCATCTTCCTCGAAT
GGATTTGCAAAATGCGAGCTCTAGCTTCCTCACTCGGATGTGGTAACTCG
ATCTTGCGATCCAAACGGCCAGATCGCATAAGAGCAGGGTCCAGGATATC
AGCACGATTTGTTGCTGCTATGACCTTAATCCGATCATCGCTGCTAAATC
CATCGAGCTGATTGAGCAACTCTAACATAGTTCGCTGCACCTCCCTGTCT
CCACTCACTTCACTGTCAAACCGCTTTGTACCAATTGCGTCAATTTCGTC
GATGAAAATAATGCAGGGGGACTTCTCCTTTGCAAGTTGAAAGGCATCAC
GAACTAGTTTGGCTCCATCTCCAATGAACATCTGGACTAGTTGAGGGCCT
GCGAGCTTCAAAAAGGTAGCATTTGTTTGTGCTGCACAAGCACGAGCCCC
T
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