CN185587 | Citrus Genome Database

Overview


Name	CN185587
Unique Name	CN185587
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	681

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig5247	contig	Csv1_Contig5247:144..824.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XANOR (30S ribosomal protein S5 OS=Xanthomonas oryzae pv. oryzae GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ HA+++ +   +VY+ PA   TG+ AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XANOP (30S ribosomal protein S5 OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ HA+++ +   +VY+ PA   TG+ AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XANOM (30S ribosomal protein S5 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ HA+++ +   +VY+ PA   TG+ AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XANCP (30S ribosomal protein S5 OS=Xanthomonas campestris pv. campestris GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ HA+++ +   +VY+ PA   TG+ AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XANCB (30S ribosomal protein S5 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ HA+++ +   +VY+ PA   TG+ AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XANC8 (30S ribosomal protein S5 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ HA+++ +   +VY+ PA   TG+ AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XANC5 (30S ribosomal protein S5 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ HA+++ +   +VY+ PA   TG+ AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_XANAC (30S ribosomal protein S5 OS=Xanthomonas axonopodis pv. citri GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ HA+++ +   +VY+ PA   TG+ AG  ++ +L   G KNV +K VGSRNP N V+A  K L+ +++P  V  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRGKKVEE 176

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_BLOPB (30S ribosomal protein S5 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 39/108 (36.11%), Postives = 68/108 (62.96%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QK+ EK  +N+  +  ++  T+ HA++  Y  +++Y+ PA   TG+ AG T++ IL + G  NV +K  GS NP N V+A   AL ++++P+ + EK G+++ E
Sbjct:   57 PSAIQKSMEKARRNMVIISLYKG-TLQHAVKGVYTGSRIYMQPASEGTGIIAGTTMRAILEVVGIHNVLAKAYGSTNPINIVRATINALQSMKSPEMIAEKRGKSISE 163

[Close]

BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEFS (30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain SBW25) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 42/108 (38.89%), Postives = 68/108 (62.96%), Query Frame = 2

Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +A+++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L A+++P+ +  K G TV E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPESIAAKRGLTVKE 164

The following BLAST results are available for this feature:

BLAST of CN185587 vs. ExPASy Swiss-Prot

BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211


Match Name	E-value	Identity	Description
RS5_XANOR	4.075e-15	38.89	30S ribosomal protein S5 OS=Xanthomonas oryzae pv....	[more]
RS5_XANOP	4.075e-15	38.89	30S ribosomal protein S5 OS=Xanthomonas oryzae pv....	[more]
RS5_XANOM	4.075e-15	38.89	30S ribosomal protein S5 OS=Xanthomonas oryzae pv....	[more]
RS5_XANCP	4.075e-15	38.89	30S ribosomal protein S5 OS=Xanthomonas campestris...	[more]
RS5_XANCB	4.075e-15	38.89	30S ribosomal protein S5 OS=Xanthomonas campestris...	[more]
RS5_XANC8	4.075e-15	38.89	30S ribosomal protein S5 OS=Xanthomonas campestris...	[more]
RS5_XANC5	4.075e-15	38.89	30S ribosomal protein S5 OS=Xanthomonas campestris...	[more]
RS5_XANAC	4.075e-15	38.89	30S ribosomal protein S5 OS=Xanthomonas axonopodis...	[more]
RS5_BLOPB	1.549e-14	36.11	30S ribosomal protein S5 OS=Blochmannia pennsylvan...	[more]
RS5_PSEFS	2.023e-14	38.89	30S ribosomal protein S5 OS=Pseudomonas fluorescen...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA