CN185582

Overview
NameCN185582
Unique NameCN185582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.063e-35
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = -2
Query:  153 VLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRKGD 407
            VLQNDIDLLNPPA         KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ++L QPTGG+A+LTEGCSFRRKGD
Sbjct:    2 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.535e-34
Identity = 71/85 (83.53%), Postives = 73/85 (85.88%), Query Frame = -2
Query:  153 VLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRKGD 407
            VLQNDIDLLNPPA         KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ+VL QPTGG+ARLTEGCSFRRKGD
Sbjct:    2 VLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.100e-32
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = -2
Query:  159 VLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 407
            VLQNDIDLLNPPA         KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ++L  PTGG+A+LTEGCSFR+K
Sbjct:    2 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.437e-32
Identity = 67/83 (80.72%), Postives = 71/83 (85.54%), Query Frame = -2
Query:  159 VLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 407
            VLQNDIDLL+PP          KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VL QPTGG+ARL EGCSFR+K
Sbjct:    2 VLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.757e-30
Identity = 65/85 (76.47%), Postives = 68/85 (80.00%), Query Frame = -2
Query:  153 VLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRKGD 407
            VL +DIDLLNPPA         KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C SVL  PTG   RLTEGCSFRRK D
Sbjct:    2 VLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.975e-26
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = -2
Query:  159 IDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 392
            +DLLNP           K+LVQ P SFFMDVKC GCFNITTVFSH+QTVV+CG+C SVL QPTGG+ARL EGCSFRRK
Sbjct:    5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CN185582 vs. ExPASy Swiss-Prot
Match: RS27_HUMAN (40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.209e-24
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = -2
Query:  159 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLRQPTGGRARLTEGCSFRRK 389
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VL QPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
The following BLAST results are available for this feature:
BLAST of CN185582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS272_ARATH1.063e-3583.5340S ribosomal protein S27-2 OS=Arabidopsis thalian... [more]
RS27_HORVU1.535e-3483.5340S ribosomal protein S27 OS=Hordeum vulgare GN=RP... [more]
RS271_ARATH1.100e-3279.5240S ribosomal protein S27-1 OS=Arabidopsis thalian... [more]
RS273_ARATH1.437e-3280.7240S ribosomal protein S27-3 OS=Arabidopsis thalian... [more]
RS27_CHLRE1.757e-3076.4740S ribosomal protein S27 OS=Chlamydomonas reinhar... [more]
RS27_SCHPO9.975e-2670.5140S ribosomal protein S27 OS=Schizosaccharomyces p... [more]
RS27_XENLA3.209e-2468.8340S ribosomal protein S27 OS=Xenopus laevis GN=rps... [more]
RS27_RAT3.209e-2468.8340S ribosomal protein S27 OS=Rattus norvegicus GN=... [more]
RS27_MOUSE3.209e-2468.8340S ribosomal protein S27 OS=Mus musculus GN=Rps27... [more]
RS27_HUMAN3.209e-2468.8340S ribosomal protein S27 OS=Homo sapiens GN=RPS27... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185582 ID=CN185582; Name=CN185582; organism=Citrus sinensis; type=EST; length=450bp
CCCCCGCAAAATTCACTTAGAATATAATCTTTCAAACATAAGATCAACCA
CACCATCCCTTTATATCAAAATTAATACATCATAACAAAAGAGGAAAAAG
GGGGAAAAAAGAAAGGATGTGACAAAATTCTTCCATCATTTAGTAGCACT
TAGTCACCCTTTCTCCGGAAAGAACATCCCTCAGTGAGTCTGGCACGTCC
ACCAGTGGGCTGGCGTAGAACGGACTGGCAGTTGCCACAAACCACCACAG
TTTGAGAGTGGCTGAAAACAGTTGTTATGTTGAAGCAACCCTGACATTTC
ACATCCATGAAAAAGGAATTGGGTGACTGAACAAGACGCTTAAGCTTGTG
CTTCTTCTTCTCAAGCTCAGCCGGAGGATTCAACAAATCAATATCATTTT
GGAGAACCGTGTTTGCAAATGCTCCGGGAGAACCTAGAAAACCCTAGCCT
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