CN185579

Overview
NameCN185579
Unique NameCN185579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8192 contig Csv1_Contig8192:178..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.531e-31
Identity = 80/203 (39.41%), Postives = 118/203 (58.13%), Query Frame = 3
Query:   15 RIKAVADNRGSLDHLQR--------SSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWP-SQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDINVQ 596
            RI+A      S+D +Q+        SS+ +   ++    VS  G+ D     RT++QM++TM+R+ ED      T P S + R  SG    R PW I+E E++ K+RFD+PG+++ DVK+ VE+++LVIK E  Q+ E S D         W      SY TR+ LPDN E +KIKAE+K+GVL+ITIPK     K++D+ +Q
Sbjct:   41 RIRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFED------TMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGE--QKKEDSDDS--------WSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQIQ 227          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.866e-31
Identity = 71/191 (37.17%), Postives = 113/191 (59.16%), Query Frame = 3
Query:   33 DNRGSLDHLQRSSLN---QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDINVQ 596
            DN   + H+ +       + +P++ A  +S  GI D +   R+++Q+++TM+R+ ED     +T+P +      G    R PW I++ E++ ++RFD+PG+ + DVKV VE+ MLVIK       E        G ++ W +  Y SY+TR+ LPDN E +K+KAE+K+GVLYITIPK     K++D+ VQ
Sbjct:    6 DNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDT----MTFPGRN----IGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEH-------GGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQVQ 181          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.866e-31
Identity = 74/202 (36.63%), Postives = 120/202 (59.41%), Query Frame = 3
Query:   21 KAVADNRGSLDHLQRSSLNQS----------QPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDINVQ 596
            +A  DN+ +   +  S+ NQ           +P++ A  VS  G+ D     RT++QMM+TM+R+ ED     +T+P  + R   G    R PW I++ EN+ K+RFD+PG+++ +VKV VE+ +LVIK E  +           G+++ W  N Y SY+TR++LPDN++ +K+KAE+K+GVL I+IPK     K+ D+ ++
Sbjct:   56 QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDT----MTFPGSRNR---GTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEES--------GKDDSWGRN-YSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEIK 241          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.027e-30
Identity = 75/200 (37.50%), Postives = 116/200 (58.00%), Query Frame = 3
Query:   21 KAVADNRGSLDHLQRSSLN---------QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDINV 593
            +A  DN+ +   +  SS           + +P + A  VS  G+ D     RT++QM++TM+R+ ED     +T+P +     SG    RTPW I + EN+ K+RFD+PG+++ DVKV VE  MLVIK E  +  +         ++  W  N Y SY+TR++LPDN+  +KIKAE+K+GVL+I+IPK     K++D+ +
Sbjct:   49 RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDT----MTFPGRNRA--SGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGR-------DKHSWGRN-YSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 67/173 (38.73%), Postives = 107/173 (61.85%), Query Frame = 3
Query:   78 QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDINVQ 596
            + +P++ +  +S  G+ D +   R+++QM++TM+RI ED     +T P +      G    R PW I++ E++ ++RFD+PG+++ DVKV VE+ +LVIK++  + N         G E+ W    Y  Y+TR+ LPDN E EK+KAE+KDGVLYITIPK      ++D+ +Q
Sbjct:   77 ERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFED----AITIPGRN----IGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREEN---------GGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQIQ 232          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 66/189 (34.92%), Postives = 112/189 (59.26%), Query Frame = 3
Query:   30 ADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDINVQ 596
            A N G+    Q+ +  Q +P++    +S  G+ D     RT++QM++TM+R+ +D     V +P++  R  +   R R PW I E E + K+RFD+PG++R +V+V VE+  LVI+ E   + EA  +G   G +  W      SY+ R+ALPD  +  +++AE+K+GVL +++PK  +  K++D+ VQ
Sbjct:   63 AQNAGN----QQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDD----AVGFPTR--RSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGE--HKKEAG-EGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQVQ 238          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 63/182 (34.62%), Postives = 107/182 (58.79%), Query Frame = 3
Query:   60 QRSSLNQSQPKKRAA--PVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQER-VRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIVDINVQ 596
            Q+ +  Q +P++ +A   +S  G+ D     RT++QM++TM+RI +D     + +P+   R + +G    R PW + E + + ++RFD+PG++R +VKV VE+  LVI+ E  +      +GS  G    W      SY+ R+ALPD  +  K++AE+K+GVL +T+PK     K++D+ VQ
Sbjct:   67 QQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDD---VALGFPATPRRSLATG--EVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGW---WKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQVQ 240          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 42/109 (38.53%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  276 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAE-KAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAK-IVDINVQ 596
            ++E ++ YK+R++VPG+ + DVK+ V + +L IK + KA+  + S +     E+E W +  YG YNT ++LPD+ + E IKAE+K+GVL + IP+     K + +I+V+
Sbjct:  129 VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPE-----EDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNVQEISVE 232          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.457e-16
Identity = 57/172 (33.14%), Postives = 89/172 (51.74%), Query Frame = 3
Query:   90 KKRAAPVSSPG---------IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNI-EFEKIKAEVKDGVLYITIPKASSTAK 575
            +   AP+S  G         ++D F A R+V Q+M  M+++ME+PF             R   R  R  W +RE E   +++ D+PG+ + DVKV VE++ L+IK+E  +  E         EEE+        Y++RI L  N+ + + IKAE+K+GVL +T+PK     K
Sbjct:   47 RSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPF---------MAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETE---------EEEQ-----RRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEK 195          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 58/161 (36.02%), Postives = 92/161 (57.14%), Query Frame = 3
Query:   78 QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNI-EFEKIKAEVKDGVLYITIPK 557
            +S P++R    S   ++D F   R+V Q++  M++ ME+P        + +    SG RRG   W I+E ++   +R D+PG++R DVK+ +E+  LVI+ E   +NE   DG   GE      +G   + +RI LPD I + ++IKAE+K+GVL + IPK
Sbjct:   55 RSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL-----SATRGMGASGARRG---WDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGE--GKNE--EDGGEEGE------SGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPK 195          
The following BLAST results are available for this feature:
BLAST of CN185579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS25P_ARATH3.531e-3139.4125.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN7.866e-3137.17Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY7.866e-3136.63Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC1.027e-3037.50Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA2.289e-3038.73Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS21C_WHEAT1.535e-2634.92Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ6.450e-2534.6226.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS26M_ARATH1.881e-1638.5326.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU2.457e-1633.14Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS23M_ARATH4.190e-1636.0223.6 kDa heat shock protein, mitochondrial OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185579 ID=CN185579; Name=CN185579; organism=Citrus sinensis; type=EST; length=733bp
GAGGCTTTTGTGGCAGGATAAAGGCCGTGGCAGATAACAGAGGCAGCCTT
GATCACTTGCAAAGATCGTCGCTGAATCAATCCCAGCCAAAAAAGAGAGC
CGCCCCAGTTTCATCTCCAGGGATATGGGATAGTTTTCCTGCTGCGAGGA
CGGTGCAACAGATGATGGAAACCATGGAAAGAATAATGGAGGATCCTTTT
GCTTACGGAGTCACTTGGCCTTCACAACAAGAAAGGGTGAGAAGTGGATA
CAGACGGGGAAGAACGCCTTGGGCCATCAGGGAAACGGAAAACGACTACA
AGATTAGGTTCGACGTGCCTGGCATGAACAGGAATGATGTTAAGGTAAGG
GTTGAAGAGAGCATGCTCGTAATCAAGGCAGAAAAGGCTCAAAGGAACGA
AGCAAGCACTGATGGAAGTACAGTTGGGGAAGAAGAAGAGTGGCCAACCA
ATGGTTACGGAAGCTACAACACTAGAATTGCATTGCCTGACAACATAGAG
TTTGAGAAGATTAAAGCAGAGGTGAAAGATGGCGTACTGTATATAACCAT
TCCAAAGGCCAGCTCCACTGCCAAAATCGTCGACATTAATGTCCAATAGG
ACAAGTATTCTGGTAACCTCAAGTTCCACATAGGACAAACCTAGATCCTC
TAAGCTCTGCCTAGAGGAAGGTGGTGGGTAGAAAATAAGTGGCAGTAGGG
TTAATTTGATTTCTTCATGGAATTTCAAACAGG
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