CN185576

Overview
NameCN185576
Unique NameCN185576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3241 contig Csv1_Contig3241:470..1275. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: TTG1_ARATH (Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 3.333e-113
Identity = 196/221 (88.69%), Postives = 210/221 (95.02%), Query Frame = -3
Query:  142 LNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 804
            LNNSK+SEFCAPLTSFDWN++EPKR+GTCSIDTTCTIWDIEK VVETQLIAHDKEV+DI WGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT+PVAELERH+A VNAIAWAPQS +HICS GDD+QA IWE  LP VAGPNGIDPMS+YSAGSEINQLQWS +QPDW+ IAF+NKMQLL+V
Sbjct:  123 LNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIWDIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWE--LPTVAGPNGIDPMSVYSAGSEINQLQWSSSQPDWIGIAFANKMQLLRV 341          
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: LWD1_ARATH (WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.610e-91
Identity = 158/221 (71.49%), Postives = 184/221 (83.26%), Query Frame = -3
Query:  142 LNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 804
            LN++K+SEFC PLTSFDWNE EP+RIGT S DTTCTIWDIE+  V+TQLIAHDKEV+DI WG   VFASVSADGSVR+FDLRDKEHSTIIYES +PDTPL+RL WNKQD RYMATI+MDS KVV+LDIR P LPV EL+RH+A VNAIAWAP S  HIC+ GDDSQA IW++         G+DP+  Y+AG+EI QLQWS +QPDW+AIAFS K+Q+L+V
Sbjct:  126 LNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 346          
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: LWD2_ARATH (WD repeat-containing protein LWD2 OS=Arabidopsis thaliana GN=LWD2 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 8.833e-90
Identity = 154/221 (69.68%), Postives = 183/221 (82.81%), Query Frame = -3
Query:  142 LNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 804
            L++ K+SEF  P+TSFDWNE EP+RIGT SIDTTCTIWDIE+ VV+TQLIAHDKEVYDI WG   VFASVS DGSVR+FDLRDKEHSTIIYES +P TPL+RL+WNKQD RYMAT++M S K+V+LDIR P LPV EL+RH+A VNAIAWAP S  HICS GDDSQA IW++         G+DP+  Y+AG+E+ QLQWS +QPDW+AIAFSNK+Q+L+V
Sbjct:  126 LSSDKNSEFSGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVGVFASVSEDGSVRVFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMATVIMGSAKIVVLDIRFPALPVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEVEQLQWSSSQPDWVAIAFSNKLQILRV 346          
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: DCAF7_MOUSE (DDB1- and CUL4-associated factor 7 OS=Mus musculus GN=Dcaf7 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.417e-71
Identity = 137/236 (58.05%), Postives = 166/236 (70.34%), Query Frame = -3
Query:  142 LNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV-----------ETQLIAHDKEVYDICWGEAR----VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 804
            LNN+K+S+FCAPLTSFDWNE++P  +GT SIDTTCTIW +E G V           +TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WNKQD  Y+AT+ MD  +VVILD+R P  PVA L  HRACVN IAWAP S  HIC+  DD QA IW++   P A     DP+  Y+A  EIN +QW+  QPDW+AI ++N +++L+V
Sbjct:  111 LNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342          
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: DCAF7_HUMAN (DDB1- and CUL4-associated factor 7 OS=Homo sapiens GN=DCAF7 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.417e-71
Identity = 137/236 (58.05%), Postives = 166/236 (70.34%), Query Frame = -3
Query:  142 LNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV-----------ETQLIAHDKEVYDICWGEAR----VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 804
            LNN+K+S+FCAPLTSFDWNE++P  +GT SIDTTCTIW +E G V           +TQLIAHDKEVYDI +  A     +FASV ADGSVR+FDLR  EHSTIIYE PQ   PLLRL WNKQD  Y+AT+ MD  +VVILD+R P  PVA L  HRACVN IAWAP S  HIC+  DD QA IW++   P A     DP+  Y+A  EIN +QW+  QPDW+AI ++N +++L+V
Sbjct:  111 LNNNKNSDFCAPLTSFDWNEVDPYLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHH-PLLRLCWNKQDPNYLATMAMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMPRAIE---DPILAYTAEGEINNVQWASTQPDWIAICYNNCLEILRV 342          
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: DCAF7_DICDI (DDB1- and CUL4-associated factor 7 homolog OS=Dictyostelium discoideum GN=wdr68 PE=3 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.566e-70
Identity = 133/216 (61.57%), Postives = 162/216 (75.00%), Query Frame = -3
Query:  142 SEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEAR-VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 786
            SEFCAPL+SFDWNE +P  + T SIDTTCTIW+IE G  +TQLIAHDKEV+DI +     +FASV ADGS+R+FDLR+ EHSTIIYE+P    PLLRL WNKQD  Y+ATI  DS KV+ILDIR P++P AEL  H++ VN I+WAP S  HIC+V DD QA IW+L   P       DP+  Y+A +EINQL WS +QPDW+AIAFS+ +Q+LKV
Sbjct:  114 SEFCAPLSSFDWNETDPSLLATSSIDTTCTIWNIETGQAKTQLIAHDKEVFDIAFARGTDLFASVGADGSLRMFDLRNLEHSTIIYETPS-FVPLLRLCWNKQDPNYLATIQQDSPKVIILDIRVPSVPAAELVFHKSAVNGISWAPHSSCHICTVSDDKQALIWDLSSMPKPIE---DPLLTYNALAEINQLSWSSSQPDWIAIAFSSHLQILKV 325          
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: YBE8_SCHPO (Uncharacterized WD repeat-containing protein C17D11.08 OS=Schizosaccharomyces pombe GN=SPBC17D11.08 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.211e-38
Identity = 98/268 (36.57%), Postives = 130/268 (48.51%), Query Frame = -3
Query:  142 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDKEHSTIIYE---------------SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLP----------------------------------------PVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 774
            APLTSFDW + +P  I   S+DTTCT+WDI     +TQLIAHDKEVYD+ +      VF SV ADGSVR+FDLR  +HSTIIYE               SP    PLLRL+    D+  MAT   +S+ V ++DIR P    A L  H+  VNA+ W P S+  + + GDD    +W+L  P                                        P+   N   P+  +    E+N L WS  + D LA+ +   +++LKV
Sbjct:  167 APLTSFDWCKTDPSYIVVSSLDTTCTVWDIVAQQSKTQLIAHDKEVYDVAFLKDSINVFVSVGADGSVRMFDLRSLDHSTIIYEGDSTFWKRNGDYTNASPPVSAPLLRLSACDSDVNLMATFHHNSSDVQMIDIRVPGTAYATLRGHKGDVNAVKWMPGSKSKLATCGDDCVVSLWDLDQPVNPSPAPTLSVSGTTPGMTGSTSEYVTPVSSVNSMRETASPLNADNQYSPLLSWKLEHEVNNLSWS-VKNDGLAVVYGKSLEILKV 433          
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: YP247_YEAST (WD repeat-containing protein YPL247C OS=Saccharomyces cerevisiae GN=YPL247C PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.675e-37
Identity = 99/278 (35.61%), Postives = 131/278 (47.12%), Query Frame = -3
Query:  142 PLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG-VVETQLIAHDKEVYDICW--GEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD---------TP-------LLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL------------PLPPVAG-----PNGIDPMSMYSAGS--------------------------------EINQLQWSPAQPDWLAIAFSNKMQLLKV 771
            P+TSFDWN ++   I + SIDTTC +WD++    V+TQLIAHD EV+D+ +     ++FAS   DGSVR+FDLR   HSTIIYE P            TP       LLRL  +  D   +AT   DSNK++ILD+R+P  P+  L+ H + VN I W P  R  + S GDD Q   W+L              P + G     P+G   M+   AGS                                EIN + W P + DW       K Q ++V
Sbjct:  245 PITSFDWNTVDTNLIISSSIDTTCIVWDLQSSHYVKTQLIAHDSEVFDVRFLTKSTQLFASCGGDGSVRVFDLRSLAHSTIIYEPPSSSVSGATAGTITPSSKGSDALLRLEPSPYDPNVLATFAADSNKIIILDMRNPESPILNLQGHGSSVNGIKWHPTKRNVLLSCGDDCQVLYWDLNSSFMEINAAGSKSPSIHGTSLEDPDGDTEMTDGGAGSGLNEDPLSLNNNSKQVCKTLETPNMMYANKTQEINNIAWRPQRGDWFGCVSGKKFQNVRV 522          
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: HAT2_ASHGO (Histone acetyltransferase type B subunit 2 OS=Ashbya gossypii GN=HAT2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 52/189 (27.51%), Postives = 91/189 (48.15%), Query Frame = -3
Query:  181 SIDTTCTIWDIEKGVVETQLI-AHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVA-----GPNGIDPMSMYSAG--SEINQLQWSPAQPDWL 717
            S DTT  +WDIE       ++ +HD  V D+ W E  + VF +VS D ++++ D R +       +     +P   L+++K     +A   +DS ++ + D+R  + P+  +  H+  V  + ++P +   ICS G D +A IW+L             +G   + M  AG  S +N+  ++P  P WL
Sbjct:  206 SDDTTVALWDIEAAKKPKSILTSHDDIVNDVKWHEFESNVFGTVSEDKTLQVHDKRVRLEPV---KKLPTASPFNTLSFSKHSRNLLAAAGVDS-QIYLYDMRDMSSPLHVMSGHQDSVTTVEFSPHTDGIICSSGSDRRAIIWDLTQIGAEQSQDDADDGAPELMMMHAGHRSPVNEFSFNPQIP-WL 389          
BLAST of CN185576 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 52/211 (24.64%), Postives = 95/211 (45.02%), Query Frame = -3
Query:  190 SFDWNEIEPKRIGTCSIDTTCTIWDIEKG----VVETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKE-HSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS--PTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL--PPVAGPNGIDP---------MSMYSAGSEINQLQWSPAQP 762
            + DW+   P R+ T        +W   +G    V +   + H + V D+ W   E  VFAS SAD S+RI+D+R     + ++  +   D  +  ++W++++   ++    D   + + D+R      PVA  ++H A V ++ W PQ      + G D+Q   W+L +   P  G    DP         + ++   +++ +L W P  P
Sbjct:  219 ALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRREPFLLSG--GDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPEPGETETDPGLAALPQQLLFVHQGETDLKELHWHPQCP 427          
The following BLAST results are available for this feature:
BLAST of CN185576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TTG1_ARATH3.333e-11388.69Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis ... [more]
LWD1_ARATH1.610e-9171.49WD repeat-containing protein LWD1 OS=Arabidopsis t... [more]
LWD2_ARATH8.833e-9069.68WD repeat-containing protein LWD2 OS=Arabidopsis t... [more]
DCAF7_MOUSE1.417e-7158.05DDB1- and CUL4-associated factor 7 OS=Mus musculus... [more]
DCAF7_HUMAN1.417e-7158.05DDB1- and CUL4-associated factor 7 OS=Homo sapiens... [more]
DCAF7_DICDI1.566e-7061.57DDB1- and CUL4-associated factor 7 homolog OS=Dict... [more]
YBE8_SCHPO1.211e-3836.57Uncharacterized WD repeat-containing protein C17D1... [more]
YP247_YEAST8.675e-3735.61WD repeat-containing protein YPL247C OS=Saccharomy... [more]
HAT2_ASHGO4.794e-1127.51Histone acetyltransferase type B subunit 2 OS=Ashb... [more]
GRWD1_MOUSE8.177e-1124.64Glutamate-rich WD repeat-containing protein 1 OS=M... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185576 ID=CN185576; Name=CN185576; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTAAATATAACTTGTACTATTCGATCTCCCTTTTT
GAATGAAAGTGCGGAGAACACATTAAGTTTCCAAGCATAAGTACATCCAA
GCAAAAGCACATAGTTAGCTATCCCAATCGAGCAAAGATCAAACTTTCAA
AAGTTGCATTTTGTTAGAGAAAGCAATTGCAAGCCAATCAGGCTGTGCAG
GAGACCATTGGAGTTGGTTAATTTCAGAGCCAGCAGAGTACATGGACATA
GGATCAATACCATTAGGTCCAGCCACGGGTGGCAATGGCAATTCCCAAAT
GAAAGCCTGCGAATCATCTCCAACAGAACATATATGCCTACGACTCTGAG
GAGCCCACGCAATGGCATTGACACAAGCTCTATGCCTCTCCAATTCAGCA
ACCGGCAATGTTGGCGACCTGATATCCAAAATGACAACTTTATTACTGTC
CATCAATATAGTTGCCATGTACCTTAAATCCTGCTTATTCCAAGCTAATC
TAAGCAATGGGGTGTCGGGTTGCGGGCTCTCGTAAATAATCGTGGAATGT
TCTTTGTCTCTCAAATCGAAAATTCTCACTGACCCATCAGCAGAAACTGA
AGCAAAAACCCTAGCTTCACCCCAGCAGATGTCGTAAACCTCTTTGTCAT
GAGCAATAAGTTGAGTTTCAACAACACCCTTTTCAATATCCCAGATAGTG
CAAGTAGTATCGATGCTACAAGTTCCAATTCTCTTGGGTTCAATCTCGTT
CCAATCAAATGAAGTCAAAGGAGCGCAAAACTCACTGCTCTTGCTGTTGT
TGAGCA
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