CN185566

Overview
NameCN185566
Unique NameCN185566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2492 contig Csv1_Contig2492:1..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_MICAN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.568e-58
Identity = 102/163 (62.58%), Postives = 128/163 (78.53%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+  L +SDNYNR+GFGHKEE ++ M  EY SD+I++++EN +    G+V + LA+++GFCWGVERAV +AYE R+ FP+E+IWITNEIIHNP+VN+RL  MAV  IPVE G+K F VV  GDVV+LPAFGA+V EM  LN+K   IVDTTCPWVSKVW
Sbjct:    2 DTKSFKRTLQQSDNYNRKGFGHKEEVMDAMTNEYQSDLIQEIRENNYRLQRGDVTIYLAQAFGFCWGVERAVAMAYETRQHFPQERIWITNEIIHNPSVNQRLRSMAVGFIPVENGQKDFTVVESGDVVILPAFGASVSEMQILNDKGCMIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.514e-56
Identity = 100/163 (61.35%), Postives = 127/163 (77.91%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+ +L +S+NY+R+GFGH+ E +  MN EY S +I+K++EN +++  G+V +KLAE++GFCWGVERAV +AYE R+ FP+EKIWITNEIIHNP+VN+RL EM V  I V  G K F VV  GDVV+LPAFGA+V EM  LN+K   IVDTTCPWVSKVW
Sbjct:    2 DTKAFKRSLQQSNNYHRKGFGHETEVMGTMNTEYQSSLIQKIRENNYQWQEGDVTIKLAEAFGFCWGVERAVAMAYETRQHFPQEKIWITNEIIHNPSVNQRLLEMNVGFIEVINGSKDFSVVEAGDVVILPAFGASVTEMQLLNDKGCTIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.374e-54
Identity = 94/165 (56.97%), Postives = 130/165 (78.79%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE-EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWT 741
            D K F+ +L +S+ Y+R+GFGH+EE   L+  EY S +I++++ NG+    G+V + LAE++GFCWGVERA+ +AYE R+QFP+E+IWITNEIIHNP+VNK L +M V+ IPV+ +G+K F VV + DVV+LPAFGA+V+EM  L++K   I+DTTCPWVSKVWT
Sbjct:    2 DTKAFKRSLHKSEQYHRKGFGHEEEVTNLLQSEYNSKLIQQIRNNGYRLQQGDVTIHLAEAFGFCWGVERAIALAYETRRQFPQERIWITNEIIHNPSVNKNLRDMKVEFIPVQPDGQKDFTVVGQNDVVILPAFGASVQEMQLLHDKGCTIMDTTCPWVSKVWT 166          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.794e-54
Identity = 97/163 (59.51%), Postives = 123/163 (75.46%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+ +L  S+NY R+GFGHK+E   +M  EY S +I+++++N +E T G+V + LAE++GFCWGVERAV +AYE RK FP EKIW+TNEIIHNP+VN RL+EM V  I V +G K F  V  GDVV+LPAFGA V+EM  LN++   IVDTTCPWVSKVW
Sbjct:    2 DTKAFKRSLNHSENYYRQGFGHKDEVAGMMTSEYQSSLIQEIRDNNYELTRGDVTIYLAEAFGFCWGVERAVAMAYETRKHFPTEKIWVTNEIIHNPSVNNRLKEMNVHFIEVVDGDKDFSGVANGDVVILPAFGATVQEMQLLNDRGCTIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.905e-54
Identity = 94/163 (57.67%), Postives = 123/163 (75.46%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+  L +SD YNR+GFG   +    +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWITNEIIHNP+VN+ L EM+V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L+ K   IVDTTCPWVSKVW
Sbjct:    2 DTKAFKRALHQSDRYNRKGFGKTTDVSGALESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWITNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGCHIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.905e-54
Identity = 94/163 (57.67%), Postives = 123/163 (75.46%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+  L +SD YNR+GFG   +    +   Y SD+I+ L++NG+    G + ++LAE++GFCWGVERAV IAYE R+ FP+E+IWITNEIIHNP+VN+ L EM+V+ IP E G+K F VV++GDVV+LPAFGA+V+EM  L+ K   IVDTTCPWVSKVW
Sbjct:    2 DTKAFKRALHQSDRYNRKGFGKTTDVSGALESAYQSDLIQSLRQNGYRLQRGEITIRLAEAFGFCWGVERAVAIAYETRQHFPQERIWITNEIIHNPSVNQHLREMSVEFIPCERGEKDFSVVDRGDVVILPAFGASVQEMQLLDEKGCHIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNR3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.519e-53
Identity = 97/163 (59.51%), Postives = 119/163 (73.01%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D + F+ +L  S+ YNRRGFG  EE    + Q Y S++I+ ++ENG+E   G V ++LAE++GFCWGVERAV IAYE R+ +P E+IWITNEIIHNP+VN  L EM V  IPVEEG K F  V  GDVV+LPAFGA V+EM  LN +   IVDTTCPWVSKVW
Sbjct:    2 DTRAFKRSLHHSERYNRRGFGRAEEVAGSLEQAYQSELIQSIRENGYELREGRVTIRLAEAFGFCWGVERAVAIAYETRRHYPTERIWITNEIIHNPSVNAHLVEMNVLFIPVEEGVKDFSGVESGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH8102) GN=ispH PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.519e-53
Identity = 96/164 (58.54%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWT 741
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ + G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V  GDVV+LPAFGA V+EM  LN +   IVDTTCPWVSKVWT
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYKLSHGRLTVRLAEAFGFCWGVERAVAMAYETRKHYPAERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFGATVQEMQLLNERGCHIVDTTCPWVSKVWT 165          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.984e-53
Identity = 94/163 (57.67%), Postives = 124/163 (76.07%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D + F+ +L  S+NY+R+GFGH EE  + +  EY S +I++++ NG+ +  G+V ++LAE++GFCWGVERAV +AYE R  FP E+IWITNEIIHNP+VN+RL +MAV+ IPV  G K F  V  GDVV+LPAFGA+V+EM  LN +   IVDTTCPWVSKVW
Sbjct:    2 DTRAFKRSLHSSENYHRKGFGHGEEVNQQLQGEYQSSLIQQIRANGYRWQQGDVTIRLAEAFGFCWGVERAVALAYETRTHFPTERIWITNEIIHNPSVNERLRQMAVEFIPVVNGVKDFSGVRPGDVVILPAFGASVQEMQLLNERGCTIVDTTCPWVSKVW 164          
BLAST of CN185566 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.984e-53
Identity = 90/163 (55.21%), Postives = 128/163 (78.53%), Query Frame = 1
Query:  250 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVW 738
            D K F+ +L +S+NY+R+GFG ++E + +MN EY S +I++++ N +  T G+V ++LAE++GFCWGVERAV ++YE R+ FP ++IW+TNE+IHNP+VN+RL +M V+ IPV E +K F VV + DVV+LPAFGA+V EM  LN+K   IVDTTCPWV+KVW
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQEDEAMGVMNSEYQSSLIQEIRNNNYRLTQGDVTIRLAEAFGFCWGVERAVAMSYETRQHFPNQRIWLTNEVIHNPSVNQRLRDMKVEFIPVIEDQKDFSVVERDDVVILPAFGASVTEMQLLNDKGCTIVDTTCPWVAKVW 164          
The following BLAST results are available for this feature:
BLAST of CN185566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
ISPH_MICAN1.568e-5862.584-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA59.514e-5661.354-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM11.374e-5456.974-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP21.794e-5459.514-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP68.905e-5457.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNE78.905e-5457.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNR31.519e-5359.514-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPX1.519e-5358.544-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB1.984e-5357.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP71.984e-5355.214-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185566 ID=CN185566; Name=CN185566; organism=Citrus sinensis; type=EST; length=743bp
AGTCATAGTTCATTCTCAGACTCCACGCCGTCCGCTAACTTTTGCGCCGT
CTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGACGACTCTGC
AATTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCAGTAATAAT
CGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATCGTCAGGTG
CTCCGGTGAAAAATCGCCGAGCTCGGCGGCGGCTATTGGTGCCGAATTTG
ACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATTACAATCGG
AGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAATCAGGAGTA
CACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGAGTATACTT
GGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTTGCTGGGGA
GTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAGTTTCCTGA
GGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAACTGTTAATA
AGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGGAAGGAAAG
AAGCAATTTGATGTGGTAAATAAGGGTGATGTTGTGGTTTTGCCTGCATT
TGGGGCTGCAGTTGAAGAAATGGTGACTCTGAATAACAAGAATGTACAGA
TTGTTGATACAACTTGCCCTTGGGTGTCTAAGGTCTGGACTTC
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