CN185561

Overview
NameCN185561
Unique NameCN185561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:127..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.370e-39
Identity = 98/198 (49.49%), Postives = 119/198 (60.10%), Query Frame = 2
Query:  116 IPRALRCTVAPSATSASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV--RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPNVKEKERADVFPVKVD 691
            +PRALR  V P A S SR FNTNA   Y                                    TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIR           S   RR+TSRI+LPEK+Y+TD+IKAEMKNGVLKV +P +KE ER ++  + VD
Sbjct:   20 VPRALRA-VRPVAAS-SRLFNTNAARNYEDGVDRNHHSNRHVSRHGGDFFSHILDPFTP-----TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDERNNIRHINVD 210          
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.398e-37
Identity = 93/184 (50.54%), Postives = 111/184 (60.33%), Query Frame = 2
Query:  146 PSATSASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXX--SVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPNVKEKERADVFPVKVD 691
            P A+SASR FNTNA+ QY                                     RSLSQVLN +D +T+NP  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+             S RR++SRIDLPEKLY+ D IKAEMKNGVLKVTVP +KE+ER +V  VKVD
Sbjct:   23 PVASSASRSFNTNAMRQYDQHSDDRNVDVYRHSFPRTRRDDLLLSDVFDPFSPP-RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202          
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.906e-36
Identity = 92/206 (44.66%), Postives = 115/206 (55.83%), Query Frame = 2
Query:  116 IPRALRCTVAPSATS------ASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV----RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPNVKEKERADVFPVKVD 691
            + R L  ++AP + S      +SR FNTNAV  Y                                    TRS+SQVLN MDQ  ENP  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIR                 RR+TSRI LP+K+Y+ D+IKAEMKNGVLKV +P +KE+ER DV  ++++
Sbjct:    7 LKRLLSSSIAPRSRSVLRPAVSSRLFNTNAVRSYDDDGENGDGVDLYRRSVPRRRGDFFSDVFDPFSP--TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQIEIN 210          
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.214e-35
Identity = 65/100 (65.00%), Postives = 80/100 (80.00%), Query Frame = 2
Query:  392 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPNVKEKERADVFPVKVD 691
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+           S RRYTSRIDLP+KLY+ DQI+AEMKNGVLKV VP +KE+ER DV  VKV+
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211          

HSP 2 Score: 27.335 bits (59), Expect = 1.214e-35
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  286 CV*SIFTNKEPEPGPELHGSDDGES 360
            CV SIF++ E EPG E  G   G+S
Sbjct:   72 CVGSIFSDSEFEPGSEHDGPGHGQS 96          

HSP 3 Score: 25.7942 bits (55), Expect = 1.214e-35
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  131 RCTVAPSATSASRFFNTNAVHQY 199
            R  + P+A+++ R F+TNA+ QY
Sbjct:   18 RSLLRPAASASHRSFDTNAMRQY 40          
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.244e-35
Identity = 73/131 (55.73%), Postives = 94/131 (71.76%), Query Frame = 2
Query:  308 TRSLSQVLNFMDQMTENPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPNVKEKERADVFPVKVD 691
            TRS+ Q++N MDQ+ ENPF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+             RRY+SRI+L   LY+ D IKAEMKNGVLKVTVP +KE+E+ DVF V VD
Sbjct:   74 TRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVMVD 204          
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 65/129 (50.39%), Postives = 86/129 (66.67%), Query Frame = 2
Query:  311 RSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPNVKEKERADVFPVKVD 691
            +SL ++L+ MD +   P        LRRGW+AKE+++AL+L +DMPGLGKE V+V  EQN+LVI+                RY+ RI+L  ++YR DQIKAEMKNGVLKV VP VKE++R DVF V V+
Sbjct:   93 QSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQRRDVFQVNVE 220          
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS26M_ORYSJ (26.2 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP26.2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 64/135 (47.41%), Postives = 80/135 (59.26%), Query Frame = 2
Query:  314 SLSQVLNFM-DQMTENPFFSGTRG----GLRRG--WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPNVKEKERADVFPVKVD 691
            SL ++L  M D         GT G      RRG  W AKE DDA++L + MPGLGKE V+V  EQN+LVI+                RYT RI+LP   ++ D+IKAEMKNGVL+V VP +KE+ER DVF V V+
Sbjct:  114 SLGRLLALMEDAAVATAAAPGTNGLATAAARRGGWWVAKEDDDAVHLKVSMPGLGKEHVKVWAEQNSLVIKGEGEKDPEDDADAAPPRYTRRIELPADAFKMDKIKAEMKNGVLRVAVPKLKEEERKDVFQVNVE 248          
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  311 RSLSQVLNFMDQMTEN--PFFSGTRGG-----LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPNVK-EKERADV 673
            R++ Q+L+ MD+M E+  P     RGG     +R  WD KE +  + +  DMPGL KEDV++S+E N LVI    +           SV  Y +R+ LP+   + D+IKAE+KNGVL +T+P  K E++  DV
Sbjct:   93 RTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEK-DKIKAELKNGVLFITIPKTKVERKVIDV 224          
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 46/132 (34.85%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  311 RSLSQVLNFMDQMTENPF-FSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI-----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPNVK-EKERADV 673
            R++ Q+++ MD++ E+   F G+R    G +R  WD K+ ++ + +  DMPGL KE+V+VS+E + LVI     +           +   Y +R+ LP+ + + D++KAE+KNGVL +++P  K EK+  DV
Sbjct:  108 RTMRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDK-DKVKAELKNGVLLISIPKTKVEKKVTDV 238          
BLAST of CN185561 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 51/133 (38.35%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  311 RSLSQVLNFMDQMTENPF-FSGTR---GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTS---RIDLPEKLYRTDQIKAEMKNGVLKVTVPNVK-EKERADV 673
            RS+ Q+L+ MD++ E+   F G     G +R  WD K+ +  + +  DMPGL KEDV+VS+E + LVI    +           S R Y+S   R+ LP+   + D++KAE+KNGVL +T+P  K E++  DV
Sbjct:   47 RSMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEK-DKVKAELKNGVLYITIPKTKVERKVIDV 178          
The following BLAST results are available for this feature:
BLAST of CN185561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HS235_ARATH4.370e-3949.4923.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA2.398e-3750.54Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS23M_ARATH5.906e-3644.6623.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_SOYBN1.214e-3565.00Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS23C_CHERU2.244e-3555.73Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS24M_ORYSJ1.904e-2650.3924.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ORYSJ8.279e-2247.4126.2 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH3.980e-1639.8525.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_PETHY4.865e-1434.85Small heat shock protein, chloroplastic OS=Petunia... [more]
HS22C_SOYBN6.354e-1438.35Small heat shock protein, chloroplastic (Fragment)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185561 ID=CN185561; Name=CN185561; organism=Citrus sinensis; type=EST; length=706bp
ATGGCCGCACTCACAAAAAGTATTTTGAAATCTCTGCATTGTTTCGTGCT
TTCTTTAAGAATTCGGCTCAATGGCGTCCTCTCTTGCTCTCAAGAGGCTT
GCTTCTTCTAATGTCATACCCAGGGCTTTACGCTGCACCGTCGCTCCTTC
TGCTACTTCAGCATCTCGGTTCTTCAACACAAACGCTGTTCATCAATACG
ATGACGGCGGAGACGACCGTGATCTCGACATTGATCGCCGTTCCGCTCGC
TCTTTCCCTCGCCGTCGTGACGACTTCTTCTCAGATGTGTTTGATCCATT
TTCACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCATGGATCAGATGA
CGGAGAATCCTTTCTTCAGCGGCACACGTGGTGGACTGCGCAGAGGCTGG
GATGCTAAAGAAACCGATGATGCGTTGAACCTCAGCATCGACATGCCAGG
GCTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAGCAGAACACGCTGGTGA
TCAGAGGCGAGGGCGGAAAAGAAGGAGAGGACGAAGAGAGCGTGCGTAGG
TACACCAGCAGGATTGATTTGCCAGAGAAGCTCTACAGGACTGATCAGAT
CAAGGCTGAGATGAAGAATGGTGTGCTGAAAGTGACGGTGCCCAATGTGA
AGGAAAAGGAGAGGGCTGATGTGTTTCCAGTGAAGGTTGATTAAAGAGTT
GGCTTT
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