CN185560

Overview
NameCN185560
Unique NameCN185560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1707 contig Csv1_Contig1707:340..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185560 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.401e-38
Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = -3
Query:  262 VDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQHLVSEAQTGGPRAAVHYAAVESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 645
            V E S KFDEHAPP+AK+V +Q H LI  A++KAQ  V EA+TGGP+AA +YAA E K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:   81 VGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208          
BLAST of CN185560 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 54/145 (37.24%), Postives = 73/145 (50.34%), Query Frame = -3
Query:  262 VDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQHLVSEAQTGG-----------------PRAAVHYAAVESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 645
            VD +  + D   PP+ K+V++Q  S  + A   A+ L SE +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:   90 VDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of CN185560 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = -3
Query:  265 EHAPPLAKRVASQVH--SLIETASQKAQHLVSEAQTGGPRAAVHYAAVESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFK 618
            + AP LA  VAS+V    +++TA    +++ S+ +         Y  V  ++     +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GYTV  YLPL+P + IAK F+
Sbjct:  115 QKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQY-----AVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
BLAST of CN185560 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 43/125 (34.40%), Postives = 60/125 (48.00%), Query Frame = -3
Query:  268 DEASRKFDEHAPPLAKRVASQVHSLIETASQKAQHLVSEAQTGGPRAAVHYAAVESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 642
            D    + D H P   K+V+SQ  S+           VSE +  G          + +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + IAK F
Sbjct:   51 DRKVGELDRHVPSNVKKVSSQARSV-----------VSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164          
BLAST of CN185560 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.268e-11
Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  268 VDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQHLVSEAQTGGPR--AAVHYAAVESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 645
            VD +    D   PP+ K+V++Q +S+ + A +    + S     G +  A   YA +E K      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T++GY V  YLPL+P + I K F
Sbjct:   74 VDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPK--AEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVF 199          
The following BLAST results are available for this feature:
BLAST of CN185560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1736_ARATH2.401e-3858.59REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
Y3550_ARATH2.856e-1537.24REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI3.158e-1437.50Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
SRP_PHAVU5.042e-1234.40Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
SRPP_HEVBR3.268e-1134.38Small rubber particle protein OS=Hevea brasiliensi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185560 ID=CN185560; Name=CN185560; organism=Citrus sinensis; type=EST; length=647bp
ATTTATGAACCATTTATCTCCATTCACATATGCGGGAAAACCAAGTCCCA
TTTGTCATTTACAGATTACAAACCATACTGCCACTACCCGGCCACACCTT
CAAGCCTAGAATTTTGCAAACCAGACCACTAGATGAAGCAAACTCATCAG
ACAAAAAGTAAATTCTTAGTCAGAATCTGAGCTTGAATCCTTTTCCTTTG
CATCTTCTTTCTTTGGAGCATCTTCTTTCTCTGGAGCATCTTCTTTCTTG
GGAGCTTCACTCTGCTTAAAAGCTTTGGCTATGTCATCAATGGGAACCAA
AGGAAGATAGCCAAAGACTGTGTAACCCTTCTTCGTCATCTCCACGACAA
GATGGTTATACTTCTTGGACCACTGTGCAGCTGTGGGAACAGCCATATCT
GCCATTGTGTGGAACAATGCATAGTGGTTTAGTTTATACCATGCTTTCAC
GGAATTTGTTACCAGAAGGTGTTTAGACTCAACAGCAGCATAATGGACAG
CTGCTCGAGGCCCCCCGGTTTGGGCCTCACTCACAAGATGTTGAGCTTTC
TGTGATGCTGTTTCAATTAGACTATGTACTTGGCTGGCAACCCGCTTGGC
CAAAGGGGGAGCGTGCTCGTCAAACTTGCGTGAAGCCTCATCCACCT
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