CN185556

Overview
NameCN185556
Unique NameCN185556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185556_ssr189 microsatellite CN185556_ssr189:189..203. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1155 contig Csv1_Contig1155:482..1278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: CPIN1_BOVIN (Anamorsin OS=Bos taurus GN=CIAPIN1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.916e-20
Identity = 72/202 (35.64%), Postives = 96/202 (47.52%), Query Frame = -1
Query:  295 KAISALEGKLLLAGFLDAQRIQLKSVVPAEV--------------VSFGVKGKKPTWKIGSSFAIKK--APKSLAKLQVXXXXXXXXXXXXXXXXXL----------------KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFL 795
            K  S L   L L+G ++ + +Q +S+ P E+              +S  + GKKP +++GSS  +K   A KS  K  V                                  KKP   S+    C  G  RKACKNC CG AE  EK +    + DQ+ + P+SACG+C LGDAFRC +CPY G+P FK GEKV LS + L
Sbjct:  110 KTASKLCSALTLSGLVEVKELQRESLSPEEIQSVREHLGYHSDSLLSLQITGKKPNFEVGSSSQLKLSIAKKSSGKPAVDPAAAKLWTLSANDMEDESVDLIDSDELLDAEDLKKPDPASLRAPSCGEGKKRKACKNCTCGLAEELEKEK----SRDQISSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLSDSNL 307          
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: CPIN1_HUMAN (Anamorsin OS=Homo sapiens GN=CIAPIN1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.051e-18
Identity = 71/203 (34.98%), Postives = 92/203 (45.32%), Query Frame = -1
Query:  295 KAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFG--------------VKGKKPTWKIGSSFAIK-----KAPKSL--------AKLQVXXXXXXXXXXXXXXXXXL-------KKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFL 795
            K  S L   L L+G ++ + +Q + + P EV S                + GKKP +++GSS  +K     K+  S+        AKL                           KKP   S+    C  G  RKACKNC CG AE  EK +       Q   P+SACG+C LGDAFRC +CPY G+P FK GEKV LS + L
Sbjct:  110 KTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGKKRKACKNCTCGLAEELEKEKSREQMSSQ---PKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLSDSNL 309          
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: CPIN1_MOUSE (Anamorsin OS=Mus musculus GN=Ciapin1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 68/201 (33.83%), Postives = 91/201 (45.27%), Query Frame = -1
Query:  295 KAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFG--------------VKGKKPTWKIGSSFAIKKAPK-----------SLAKLQVXXXXXXXXXXXXXXXXXL-------KKPQLPSVG--DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSNFL 795
            K  S L   L L+G ++ + +Q +++ P EV S                V GKKP +++GSS  +K   K           + AKL                           K+P   S+    C  G  RKACKNC CG AE  E+ +       Q   P+SACG+C LGDAFRC  CPY G+P FK GE+V LS++ L
Sbjct:  110 KTASKLCSALTLSGLVEIKELQREALSPEEVQSVQEHLGYHSDSLRSVRVTGKKPNFEVGSSSQLKLPNKKSSSVKPVVDPAAAKLWTLSANDMEDDSVDLIDSDELLDPEDLKRPDPASLKAPSCGEGKKRKACKNCTCGLAEELEREQSKA----QSSQPKSACGNCYLGDAFRCANCPYLGMPAFKPGEQVLLSNSNL 306          
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: YO97_CAEEL (Uncharacterized protein T20B12.7 OS=Caenorhabditis elegans GN=T20B12.7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.332e-16
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = -1
Query:  304 GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSS 528
            G  +    ++ACKNC CG AE EE +EK+G    +   P+S+CG+C LGDAFRC TCPY G PPFK GE V +S+
Sbjct:  164 GPDDPNKKKRACKNCSCGLAEQEE-LEKMGQIAAE---PKSSCGNCSLGDAFRCSTCPYLGQPPFKPGETVKIST 234          
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: DRE2_NEUCR (Protein dre-2 OS=Neurospora crassa GN=dre-2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.798e-14
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -1
Query:  301 GSTRKACKNCICG---RAEAEEKV--EKLGLTMDQLK--------------NPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 513
            G  R+ACK+C CG   R EAE+K   +K    ++ LK                  +CGSC LGDAFRC  CPY GLPPFK+GE+VS+ +N
Sbjct:  240 GKKRRACKDCTCGLAERLEAEDKARRDKADQALNTLKLKSEDLLELDLTVPGKTGSCGSCALGDAFRCAGCPYLGLPPFKVGEEVSILNN 329          
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: DRE2_COCIM (Protein DRE2 OS=Coccidioides immitis GN=DRE2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.126e-12
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = -1
Query:  301 EVGSTRKACKNCICG------------RAEAEEKVEKLGLTMDQL-------KNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 519
            + G  R+ACK+C CG            RA+A+  +E + L   +L       +    +CG+C LGDAFRC  CPY GLPPFK GE+V L SN
Sbjct:  226 KAGKRRRACKDCTCGLAERLREEDKAARAKADATLETMKLAPKELAEVDFTVQGKLGSCGNCALGDAFRCDGCPYIGLPPFKPGEEVRLLSN 317          
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: DRE2_SCLS1 (Protein dre2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dre2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12
Identity = 42/104 (40.38%), Postives = 54/104 (51.92%), Query Frame = -1
Query:  301 KKP-QLPSVGDCEVGSTRKACKNCICG------------RAEAEEKVEKLGLTMDQL-------KNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 552
            KKP  +P       G  R+ACK+C CG            RA A+ +++ L L  D L       K    +CG+C LGDAFRC  CPY G+P FK GE+V L +N
Sbjct:  243 KKPLAIPPECAPRAGKRRRACKDCTCGLAEKLAKEDAEKRATADSQLQALKLDADDLAEVDFTVKGKVGSCGNCSLGDAFRCDGCPYIGMPAFKPGEEVRLLNN 346          
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: DRE2_YARLI (Protein DRE2 OS=Yarrowia lipolytica GN=DRE2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12
Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = -1
Query:  310 RKACKNCICGRAEAEEKVEKLGLTMDQ---------------LKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSL 504
            RKACK+C CG  E EE+ +   L                   ++     CGSC LGDAFRC  CPY GLPPFK GE VS+
Sbjct:  195 RKACKDCTCGLKEMEEQAKDAQLAAQNTVTLSAEDTAEIDFTVQGKTGGCGSCALGDAFRCDGCPYLGLPPFKPGEAVSI 274          
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: DRE2_BOTFB (Protein dre2 OS=Botryotinia fuckeliana (strain B05.10) GN=dre2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = -1
Query:  301 KKP-QLPSVGDCEVGSTRKACKNCICG------------RAEAEEKVEKLGLTMDQL-------KNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 552
            KKP  +P       G  R+ACK+C CG            RA A+ +++ L L  D L       +    +CG+C LGDAFRC  CPY G+P FK GE+V L +N
Sbjct:  248 KKPLAIPPECAPRAGKRRRACKDCTCGLAEKLAKEDADKRATADSQLQALKLDADDLAEVDFTVQGKVGSCGNCSLGDAFRCDGCPYIGMPAFKPGEEVRLLNN 351          
BLAST of CN185556 vs. ExPASy Swiss-Prot
Match: DRE2_CHAGB (Protein DRE2 OS=Chaetomium globosum GN=DRE2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.533e-12
Identity = 39/100 (39.00%), Postives = 50/100 (50.00%), Query Frame = -1
Query:  301 QLPSVGDCEVGSTRKACKNCICG---RAEAEEKVEKLGLTMD----------------QLKNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSSN 543
            Q P     + G  R+ACK+C CG   R EAE+K  +     D                 ++    +CGSC LGDAFRC  CPY GLP FK GE+V + +N
Sbjct:  259 QQPPECQPQPGKKRRACKDCTCGLASRMEAEDKARRAKADSDLNTLKLKSEDLNELDFTVQGKTGSCGSCYLGDAFRCSDCPYIGLPAFKPGEEVKIVNN 358          
The following BLAST results are available for this feature:
BLAST of CN185556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CPIN1_BOVIN1.916e-2035.64Anamorsin OS=Bos taurus GN=CIAPIN1 PE=2 SV=1[more]
CPIN1_HUMAN1.051e-1834.98Anamorsin OS=Homo sapiens GN=CIAPIN1 PE=1 SV=2[more]
CPIN1_MOUSE2.343e-1833.83Anamorsin OS=Mus musculus GN=Ciapin1 PE=2 SV=1[more]
YO97_CAEEL8.332e-1653.33Uncharacterized protein T20B12.7 OS=Caenorhabditis... [more]
DRE2_NEUCR7.798e-1445.56Protein dre-2 OS=Neurospora crassa GN=dre-2 PE=3 S... [more]
DRE2_COCIM1.126e-1242.39Protein DRE2 OS=Coccidioides immitis GN=DRE2 PE=3 ... [more]
DRE2_SCLS12.509e-1240.38Protein dre2 OS=Sclerotinia sclerotiorum (strain A... [more]
DRE2_YARLI3.276e-1245.00Protein DRE2 OS=Yarrowia lipolytica GN=DRE2 PE=3 S... [more]
DRE2_BOTFB7.299e-1239.42Protein dre2 OS=Botryotinia fuckeliana (strain B05... [more]
DRE2_CHAGB9.533e-1239.00Protein DRE2 OS=Chaetomium globosum GN=DRE2 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185556 ID=CN185556; Name=CN185556; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTCAATGCAATGAGAGAAAAATCATTCCAGCATTCTTCTCTCCT
TGCCTTTATGTAAATACTGTGACAAAATTTATTATCTACTTAAATCCTTG
TGTTACAGATTCACGGACAACAGCCAAACCATGTAGTGGGGAGCTAGAGT
TCCCCATCGACACAATATAAATGTTCAACAATGAAAAATCATTTCATTTC
ATTAGAGCCTATAGTTAAGCAACTCCAGAAACAATCCGCCTGATTCTTTT
CTCAGATGCATCTGCCCGAAATTTCATGTCTAAATGTCTGCTACGAGGAA
GTTGCTTGACAGTGACACCTTCTCGCCCAGTTTGAATGGAGGCAGACCCT
TGTAAGGGCATGTACCGCAGCGGAAAGCATCGCCAAGTCCACAACTCCCA
CATGCCGACTGTGGATTCTTCAACTGATCCATAGTCAATCCCAACTTTTC
TACTTTCTCCTCTGCCTCAGCCCTACCACAAATGCAGTTTTTGCAAGCTT
TCCTTGTGCTTCCAACTTCACAATCACCAACCGATGGTAACTGTGGTTTC
TTCAAATCCTCTTCGGTTAAGAGGGTATCTTCATCAATCAAATCAGAATC
ATCATCCACCTGAAGTTTCGCTAAGCTTTTTGGAGCCTTCTTAATAGCAA
AGGATGACCCGATTTTCCATGTAGGCTTCTTACCCTTTACCCCAAATGAA
ACGACTTCAGCTGGTACAACTGATTTTAGTTGAATACGTTGTGCATCTAG
AAACCCTGCTAACAGCAACTTGCCCTCAAGAGCAGAGATTGCCTTATC
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