CN185550
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 3.115e-33 Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = -3 Query: 2 MSGKGAKGLIMGXXXXXXXXXXXXKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274 MSGKGAKGLIMG KPI+RSSRAGLQFPVGR+HRLLK+R+TAHGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRI Sbjct: 1 MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRI 91
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 7.939e-29 Identity = 69/95 (72.63%), Postives = 73/95 (76.84%), Query Frame = -3 Query: 2 MSGKGAKGLIMGXXXXXXXXXXXXK----PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274 M+GKG KGL+ P+SRSSRAGLQFPVGRIHR LKSR +AHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI Sbjct: 1 MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 95
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 5.146e-28 Identity = 68/94 (72.34%), Postives = 72/94 (76.60%), Query Frame = -3 Query: 2 MSGKGAKGLIMGXXXXXXXXXXXXK---PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274 M+GKG KGL+ P+SRSSRAGLQFPVGRIHR LK RT A+GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI Sbjct: 1 MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 94
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.146e-27 Identity = 66/93 (70.97%), Postives = 74/93 (79.57%), Query Frame = -3 Query: 2 MSGKGAKGLIMGXXXXXXXXXXXXK--PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274 M+GKG KGL+ K PISRS+RAG+QFPVGRIHR LK+R +AHGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRI Sbjct: 1 MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRI 93
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 5.690e-27 Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = -3 Query: 2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196 +SRS+RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI Sbjct: 18 VSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27 Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3 Query: 2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196 +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27 Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3 Query: 2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196 +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27 Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3 Query: 2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196 +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_ONCMY (Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1 SV=4) HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27 Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3 Query: 2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196 +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_MOUSE (Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27 Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3 Query: 2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196 +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI Sbjct: 18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82 The following BLAST results are available for this feature:
BLAST of CN185550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 233
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185550 ID=CN185550; Name=CN185550; organism=Citrus sinensis; type=EST; length=366bpback to top |