CN185550

Overview
NameCN185550
Unique NameCN185550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.115e-33
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = -3
Query:    2 MSGKGAKGLIMGXXXXXXXXXXXXKPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274
            MSGKGAKGLIMG            KPI+RSSRAGLQFPVGR+HRLLK+R+TAHGRVGATAAVY+AAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:    1 MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRI 91          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.939e-29
Identity = 69/95 (72.63%), Postives = 73/95 (76.84%), Query Frame = -3
Query:    2 MSGKGAKGLIMGXXXXXXXXXXXXK----PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274
            M+GKG KGL+                   P+SRSSRAGLQFPVGRIHR LKSR +AHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:    1 MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 95          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.146e-28
Identity = 68/94 (72.34%), Postives = 72/94 (76.60%), Query Frame = -3
Query:    2 MSGKGAKGLIMGXXXXXXXXXXXXK---PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274
            M+GKG KGL+                  P+SRSSRAGLQFPVGRIHR LK RT A+GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:    1 MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 94          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.146e-27
Identity = 66/93 (70.97%), Postives = 74/93 (79.57%), Query Frame = -3
Query:    2 MSGKGAKGLIMGXXXXXXXXXXXXK--PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 274
            M+GKG KGL+              K  PISRS+RAG+QFPVGRIHR LK+R +AHGRVGATAAVY+A+ILEYLTAEVLELAGNASKDLKVKRI
Sbjct:    1 MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRI 93          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.690e-27
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS+RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_ONCMY (Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1 SV=4)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
BLAST of CN185550 vs. ExPASy Swiss-Prot
Match: H2AZ_MOUSE (Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = -3
Query:    2 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 196
            +SRS RAGLQFPVGRIHR LKSRTT+HGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82          
The following BLAST results are available for this feature:
BLAST of CN185550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AV3_ARATH3.115e-3381.32Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV1_ORYSJ7.939e-2972.63Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV3_ORYSJ5.146e-2872.34Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV1_ARATH1.146e-2770.97Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV_DROME5.690e-2793.85Histone H2A.v OS=Drosophila melanogaster GN=His2Av... [more]
H2AZ_SHEEP7.431e-2793.85Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT7.431e-2793.85Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]
H2AZ_PONAB7.431e-2793.85Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3[more]
H2AZ_ONCMY7.431e-2793.85Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1... [more]
H2AZ_MOUSE7.431e-2793.85Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185550 ID=CN185550; Name=CN185550; organism=Citrus sinensis; type=EST; length=366bp
TTATACGCTTCACCTTAAGATCTTTGCTTGCATTTCCAGCCAGCTCCAAC
ACCTCTGCAGTCAAATATTCCAAGATGGCAGCAGAGTACACAGCAGCAGT
CGCTCCTACTCTTCCATGTGCTGTGGTTCTTGACTTCAAAAGACGGTGAA
TCCGACCAACCGGGAACTGAAGGCCAGCACGGGAAGAGCGGGAAATGGGT
TTCTTCTTGTCCTTGTCCTTGTTACTAGCCGAGGCCTTTCCCATGATCAA
ACCTTTCGCGCCTTTTCCCGACATCTTTCCCGCCAATAATTTAACAGATT
TCGAGACAGAGACAGATTCCGCAAAGATGAAGAAAGACGGGTGAGGTTTC
AAAGCCAAAGAACCCT
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